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berkeley_reactor_200306_planktonic_scaffold_308111_4

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_58_30

near complete RP 49 / 55 BSCG 49 / 51 ASCG 14 / 38 MC: 1
Location: comp(1787..3115)

Top 3 Functional Annotations

Value Algorithm Source
Putative transcriptional regulator, GntR family n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XI52_9BACT similarity UNIREF
DB: UNIREF100
  • Identity: 59.4
  • Coverage: 342.0
  • Bit_score: 417
  • Evalue 8.60e-114
Putative transcriptional regulator, GntR family {ECO:0000313|EMBL:EEF60545.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 59.4
  • Coverage: 342.0
  • Bit_score: 417
  • Evalue 1.20e-113
GntR family transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 41.6
  • Coverage: 445.0
  • Bit_score: 308
  • Evalue 2.10e-81

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Taxonomy

Pedosphaera parvula → Pedosphaera → Verrucomicrobiales → Verrucomicrobiae → Verrucomicrobia → Bacteria

Sequences

DNA sequence
Length: 1329
ATGAAAACCGCCTTGTCCGCCCTGAGCCGTCGCACCACGCCGCCGCCGATTTCGTGGCTGATGAAAACCGCCCTGTCGCGGCCCAAACTCATTTCGCTCGCCGCCGGTTTCACGGACAACCCGACCCTGCCGGTTCAGTTGTCGCGCGAACTGCTCAACGAAATTTTGCGTTCGCCGAAAACCGGCCGGCCCGCTTTGCAATACGGCATGGCGGCCGGCGAACCGCGCCTGCGGGCGCTGACGGCCGCACACTTGCAGCAGCTCGACGGCGGCCACGATCGCGCGCATTCGCCGGAACACGTCCTCCTTACCGGCGGTTCGCAGCAGTTGCTTTACATGACGCTGGAGGCGCTGTGCGACGAGGGCGACATCGTGCTGGTCGAGGATCCGACGTATTTCGTTTTCCTGGGCATTCTGCAAAGCCGGGGCATCCGGGCGCACGGCGTGAAGCTGGAACGCGACGGACTGGATCTCGCGCATCTCGAAATCGTTTTGGAACGGCTGAGAAAATCCGGCGAACTCCGGCGGCTCAAGGCGCTTTATCTGGTCACGTATTTTCAAAATCCCACCGGGGCCACAACGACGCTGGCAAAAAAGCGCGCCGCCCTGGTCCTGCTGAAACAATACGAGCGCTTTGCCGGCCATCCGATTTACCTGATCGAAGACGCCGCGTATCGTGAACTGGCTTTTCCTGGCCGCGCTGGCCGGGCTGACCGGCCGTCCCGCCCGGCGATGCCGCCGCTTCGTCCCATCATGACGAAGGAGGCGCCGCCGACCGCACTGGTGTTGCCCGGCGCGAAAAACCGGGTGATCTATGCCGGCACTTACAGCAAACCTTACGCGCCCGGCGCGCGGCTCGGATTTGGCATTTTGCCGGAACCGGTTTACAGCGCGGTGCTGCGCATCAAGGGCAATCATGATTTCGGCTCGGCCAATCTGTTGCAGCAGTTGCTCGCCCGCGCCCTGGAAACTGGACGCTACGACCGGCACGTGGCCCAGGTTCAAAAAAACTACGCCCGCAAAGCCGCCGTCATGAAGCGGGCGCTGGCGGAGCATTTCCCGGCGGGCGTCGAAATCTGGGAGCCGGCGGGCGGATTGTATTTTTGGGCGTGCCTGCCAAAGGGCGTTTCCGCCGGCCTGAAATCCAAAGTGTTTCACGCCGCGATGAAAAGCGACGTGCTCTACGTTCCCGGGGAACTGTGTTATGCCGACGATCCGTGGCGACGCAAGCCGGCGAACGGCCTGCGCATCAGCTTCGGCAACGCCAGCGCGGAAACCATCCGCGAAGGCATCAAACGTTTGGGGGCGGTGCTGCGGCAGTTTGTGTGA
PROTEIN sequence
Length: 443
MKTALSALSRRTTPPPISWLMKTALSRPKLISLAAGFTDNPTLPVQLSRELLNEILRSPKTGRPALQYGMAAGEPRLRALTAAHLQQLDGGHDRAHSPEHVLLTGGSQQLLYMTLEALCDEGDIVLVEDPTYFVFLGILQSRGIRAHGVKLERDGLDLAHLEIVLERLRKSGELRRLKALYLVTYFQNPTGATTTLAKKRAALVLLKQYERFAGHPIYLIEDAAYRELAFPGRAGRADRPSRPAMPPLRPIMTKEAPPTALVLPGAKNRVIYAGTYSKPYAPGARLGFGILPEPVYSAVLRIKGNHDFGSANLLQQLLARALETGRYDRHVAQVQKNYARKAAVMKRALAEHFPAGVEIWEPAGGLYFWACLPKGVSAGLKSKVFHAAMKSDVLYVPGELCYADDPWRRKPANGLRISFGNASAETIREGIKRLGAVLRQFV*