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berkeley_reactor_200306_planktonic_scaffold_308111

Search features with annotation key words

Displaying items 1-30 of 49 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_308111_1
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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453..761
DNA (309bp) protein (103aa)
Transcriptional repressor NrdR n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XHZ5_9BACT
Transcriptional repressor NrdR {ECO:0000256|HAMAP-Rule:MF_00440, ECO:0000256|SAAS:SAAS00087559}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
ATP-cone domain-containing protein
berkeley_reactor_200306_planktonic_scaffold_308111_2
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

758..1309
DNA (552bp) protein (184aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XHZ6_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF60489.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_308111_3
Microcoleus sp. PCC 7113, Microcoleus, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

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1439..1780
DNA (342bp) protein (114aa)
zinc-binding protein n=1 Tax=Prochlorothrix hollandica RepID=UPI00034D6375
HIT family hydrolase, diadenosine tetraphosphate hydrolase
HIT family hydrolase, diadenosine tetraphosphate hydrolase {ECO:0000313|EMBL:AFZ17335.1}; TaxID=1173027 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Microcoleus.;" source="Microcoleus sp. PCC 7113.;"
berkeley_reactor_200306_planktonic_scaffold_308111_4
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(1787..3115)
DNA (1329bp) protein (443aa)
Putative transcriptional regulator, GntR family n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XI52_9BACT
Putative transcriptional regulator, GntR family {ECO:0000313|EMBL:EEF60545.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
GntR family transcriptional regulator
berkeley_reactor_200306_planktonic_scaffold_308111_5
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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comp(3188..4114)
DNA (927bp) protein (309aa)
Transcriptional regulator, LysR family n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D7K8_9BACT
Transcriptional regulator, LysR family {ECO:0000313|EMBL:EDY17625.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
LysR family transcriptional regulator
berkeley_reactor_200306_planktonic_scaffold_308111_6
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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4180..5343
DNA (1164bp) protein (388aa)
Nitrate transporter, putative n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XJ74_9BACT
Nitrate transporter, putative {ECO:0000313|EMBL:EEF60112.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
nitrate transporter
berkeley_reactor_200306_planktonic_scaffold_308111_7
Alcanivorax hongdengensis, Alcanivorax, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

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5312..6691
DNA (1380bp) protein (460aa)
Nitrate transport ATP-binding protein n=1 Tax=Alcanivorax hongdengensis A-11-3 RepID=L0WAZ2_9GAMM
Nitrate transport ATP-binding protein {ECO:0000313|EMBL:EKF73913.1}; TaxID=1177179 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Alcanivoracaceae; Alcanivorax.;" source="Alcanivorax hongdengensis A-11-3.;"
nrtC; nitrate transport ATP-binding protein
berkeley_reactor_200306_planktonic_scaffold_308111_8

Not on your lists

6827..7858
DNA (1032bp) protein (344aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2FK56_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKE18159.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component
berkeley_reactor_200306_planktonic_scaffold_308111_9
GWF2_Lentisphaerae_50_93_curated, Lentisphaerae, Bacteria

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comp(7889..8356)
DNA (468bp) protein (156aa)
Uncharacterized protein id=2823662 bin=GWF2_Lentisphaerae_50_93 species=Nostoc sp. genus=Nostoc taxon_order=Nostocales taxon_class=unknown phylum=Cyanobacteria tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
hypothetical protein
Tax=GWF2_Lentisphaerae_50_93_curated
berkeley_reactor_200306_planktonic_scaffold_308111_10
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

8445..9368
DNA (924bp) protein (308aa)
Nitrate ABC transporter, ATPase subunits C and D n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XJ71_9BACT
Nitrate ABC transporter, ATPase subunits C and D {ECO:0000313|EMBL:EEF60109.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
nitrate ABC transporter ATP-binding protein
berkeley_reactor_200306_planktonic_scaffold_308111_11
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

9508..10311
DNA (804bp) protein (268aa)
Nitrate ABC transporter, ATPase subunits C and D n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XJ70_9BACT
Nitrate ABC transporter, ATPase subunits C and D {ECO:0000313|EMBL:EEF60108.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
nrtD; nitrate transport ATP-binding protein
berkeley_reactor_200306_planktonic_scaffold_308111_12
Opitutaceae bacterium TAV5, Opitutales, Opitutae, Verrucomicrobia, Bacteria

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10352..11770
DNA (1419bp) protein (473aa)
Putative uncharacterized protein n=1 Tax=Opitutaceae bacterium TAV5 RepID=H1IXA7_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHF89347.1}; TaxID=794903 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV5.;"
berkeley_reactor_200306_planktonic_scaffold_308111_13
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

12092..13882
DNA (1791bp) protein (597aa)
Sulfite reductase (NADPH) flavoprotein, alpha chain n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D7K3_9BACT
Sulfite reductase (NADPH) flavoprotein, alpha chain {ECO:0000313|EMBL:EDY17620.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
CysJ
berkeley_reactor_200306_planktonic_scaffold_308111_14
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

14093..16021
DNA (1929bp) protein (643aa)
Precorrin-3B synthase {ECO:0000313|EMBL:EEF60102.1}; EC=1.7.7.1 {ECO:0000313|EMBL:EEF60102.1};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Precorrin-3B synthase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XJ64_9BACT
precorrin-3B synthase
berkeley_reactor_200306_planktonic_scaffold_308111_15
unknown

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16005..16250
DNA (246bp) protein (82aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_308111_16
Burkholderia multivorans, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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16324..18828
DNA (2505bp) protein (835aa)
Sulfite reductase [NADPH] flavoprotein alpha-component (Sir-fp) n=1 Tax=Burkholderia multivorans CGD1 RepID=B9B020_9BURK
Reductase {ECO:0000313|EMBL:KHS16158.1}; TaxID=87883 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia multivorans.;"
molybdopterin oxidoreductase
berkeley_reactor_200306_planktonic_scaffold_308111_17
Verrucomicrobia bacterium IMCC26134, Verrucomicrobia, Bacteria

Not on your lists

18871..19329
DNA (459bp) protein (153aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CUD5_9BACT
molybdenum cofactor biosysynthesis protein
Molybdenum cofactor biosysynthesis protein {ECO:0000313|EMBL:AKC83143.1}; TaxID=1637999 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia.;" source="Verrucomicrobia bacterium IMCC26134.;"
berkeley_reactor_200306_planktonic_scaffold_308111_18

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19326..19970
DNA (645bp) protein (215aa)
Probable molybdenum cofactor guanylyltransferase {ECO:0000256|HAMAP-Rule:MF_00316}; Short=MoCo guanylyltransferase {ECO:0000256|HAMAP-Rule:MF_00316};; EC=2.7.7.77 {ECO:0000256|HAMAP-Rule:MF_00316};; GTP:molybdopterin guanylyltransferase {ECO:0000256|HAMAP-Rule:MF_00316}; Mo-MPT guanylyltransferase {ECO:0000256|HAMAP-Rule:MF_00316}; Molybdopterin guanylyltransferase {ECO:0000256|HAMAP-Rule:MF_00316}; Molybdopterin-guanine dinucleotide synthase {ECO:0000256|HAMAP-Rule:MF_00316}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
molybdopterin-guanine dinucleotide biosynthesis protein A n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001745967
molybdopterin-guanine dinucleotide biosynthesis protein A-like protein
berkeley_reactor_200306_planktonic_scaffold_308111_19
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

19990..20637
DNA (648bp) protein (216aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XEC5_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF61639.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_308111_20
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

20710..21174
DNA (465bp) protein (155aa)
PTS system fructose-specific transporter subunit IIBC (EC:2.7.1.69)
Putative PTS IIA-like nitrogen-regulatory protein PtsN n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XEC3_9BACT
Putative PTS IIA-like nitrogen-regulatory protein PtsN {ECO:0000313|EMBL:EEF61637.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_308111_21
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists


21269..23167
DNA (1899bp) protein (633aa)
Arginine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00123}; EC=6.1.1.19 {ECO:0000256|HAMAP-Rule:MF_00123};; Arginyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00123}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
arginyl-tRNA synthetase (EC:6.1.1.19)
Arginine--tRNA ligase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D6N9_9BACT
berkeley_reactor_200306_planktonic_scaffold_308111_22
unknown

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23363..24187
DNA (825bp) protein (275aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_308111_23
unknown

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comp(24122..24289)
DNA (168bp) protein (56aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_308111_24
CG_Arma_01, Armatimonadetes, Bacteria

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24621..25265
DNA (645bp) protein (215aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00037BCE14
ECF subfamily RNA polymerase sigma-24 factor
Tax=CG_Arma_01
berkeley_reactor_200306_planktonic_scaffold_308111_25
CG_Arma_01, Armatimonadetes, Bacteria

Not on your lists

25337..25582
DNA (246bp) protein (82aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium TAA166 RepID=UPI0003B69ED5
hypothetical protein
Tax=CG_Arma_01
berkeley_reactor_200306_planktonic_scaffold_308111_26
RIFOXYB2_FULL_RIF07_49_35_curated, RIF7, Bacteria

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comp(25937..28111)
DNA (2175bp) protein (725aa)
hypothetical protein n=1 Tax=Meiothermus timidus RepID=UPI0003612CEB
cell wall/surface repeat protein
Tax=RIFOXYB2_FULL_RIF07_49_35_curated
berkeley_reactor_200306_planktonic_scaffold_308111_27
Verrucomicrobiae bacterium DG1235, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(28125..29591)
DNA (1467bp) protein (489aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=382464 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales.;" source="Verrucomicrobiae bacterium DG1235.;"
ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JJF0_9BACT
sensor histidine kinase
berkeley_reactor_200306_planktonic_scaffold_308111_28
unknown

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comp(29609..30724)
DNA (1116bp) protein (372aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_308111_29
unknown

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comp(30898..31479)
DNA (582bp) protein (194aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_308111_30
Verrucomicrobiae bacterium DG1235, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(31694..33097)
DNA (1404bp) protein (468aa)
Sigma-54 interaction domain family n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JJG0_9BACT
Sigma-54 interaction domain family {ECO:0000313|EMBL:EDY83147.1}; TaxID=382464 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales.;" source="Verrucomicrobiae bacterium DG1235.;"
response regulator in two-component reguatory system, sigma54 dependent transcriptional regulator
Displaying items 1-30 of 49 in total

View Taxonomy