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berkeley_reactor_200306_planktonic_scaffold_308111_30

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_58_30

near complete RP 49 / 55 BSCG 49 / 51 ASCG 14 / 38 MC: 1
Location: comp(31694..33097)

Top 3 Functional Annotations

Value Algorithm Source
Sigma-54 interaction domain family n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JJG0_9BACT similarity UNIREF
DB: UNIREF100
  • Identity: 52.6
  • Coverage: 464.0
  • Bit_score: 467
  • Evalue 1.30e-128
Sigma-54 interaction domain family {ECO:0000313|EMBL:EDY83147.1}; TaxID=382464 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales.;" source="Verrucomicrobiae bacterium DG1235.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 52.6
  • Coverage: 464.0
  • Bit_score: 467
  • Evalue 1.80e-128
response regulator in two-component reguatory system, sigma54 dependent transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 42.4
  • Coverage: 458.0
  • Bit_score: 325
  • Evalue 1.30e-86

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Taxonomy

Verrucomicrobiae bacterium DG1235 → Verrucomicrobiales → Verrucomicrobiae → Verrucomicrobia → Bacteria

Sequences

DNA sequence
Length: 1404
ATGGCAGAATTCAATCTCACAGGCCTGGACATCCTGCTGGTGGAAGATGATCCGATGCTGCGCCGGCGCGAAGCGGCGATGCTGGAGCGTCTCGGTGCGGAGGTGAGCGCCGTGGATACGCTTGCGGGCGCGCGCCGGCTGATCGGTGTGACGCCGTTTGATTTCGCCGTGCTGGACGTCAATCTGCCCGACGGCCTCGGGACGGATTTGTTGAAGGAGCAGGCGTTTGGCGCCGACACGGCCGTCATTATTGTCACCGCCCATGGCGGCGTGGCCGGCGCGGTCGAGGCCATGCGCGGCGGCGCGGCGGACTACCTGGTCAAGCCGCTGGAGCCGGAGGAATTGCCGCTGGTTTTGGAGCGGACGCGCCGCTCGCGGCAATCCGCCCGCGCCGGCGAGCACCGGCGCAAAGGCCGGGCCCAGGAGGGATTTTTCTTCGGCACCGCGCTCCAGCCGCTGGCAGCACAACTGGAAAAAATCATCGCCGCCGACCGGCGCATGCAGGGCCCGTTGCCGCCGGTGTTGATTCAAGGTGAAACCGGCACCGGCAAAACCGCGCTGGCCCGCTGGCTGCATGAACACGGTCCGCGCGCGGAAGCCGAGCTTATTGAGGTGAACTGTCCGGCCTTGCCGGAAACCCTGGCCGAATCCGAATTATTCGGTCACGAACGCGGCGCGTTCACCGATGCGAAAAATACCCGCATGGGACTGTTTGAAGCCGCGCAAGGCGGCACGTTGTTCCTCGACGAGCTGCCGAGTTTGTCGCCCGCCCTGCAAGCCAAGGTGCTGGTCGCCATCGAAGATCAAAAAATCCGCCGCGTGGGCGGCAATAAAGCCATCCCAGTGGATGTCCGCATCATCGCCGCGGCGCAACGCGATCTGCGGGCGATGGTTGCGGAAGGCGGTTTTCGCGAAGATTTGTATCAGCGGCTCGATCTCTTTCGCGTCGCCATTCCCCCCCTGCGCGAACGCGGCGAAGACATCGTCCTCCTGGCGGAGTGGTTTTTGATTCCGCTTTCCCAAAAACACCGCCTGCCGGCGAGAACCATGTCGCCAGCCGGCCGGGCGCGATTGCTCGCTTATCACTGGCCGGGCAATGTGCGTGAACTGGCGCATGAACTGGAGCGGGCGGTGGTTTTTGAGGAGGGCGGGGAATTGAACCTGTCCCACCTGCCGGGTGGCGTGGCGGCTCCCGCGGCGAACGGCCAGCCGGAGTGGCTCAAGCCTGGATTTGTGTTTCCAGAATCGGGCTTTTCACTGGAAGCCGCCATCAACCGGCTCTTGCAACTGGCCCTGTCGCAAACCGATGGAAATGTTTCCGCAGCGGCGCGTCTGCTGGGTGTGCCGCGTGATTTTGTGCGCTACCGGCTGGGACTGAAAAACCGGGTTTCCGATGGGAACTAG
PROTEIN sequence
Length: 468
MAEFNLTGLDILLVEDDPMLRRREAAMLERLGAEVSAVDTLAGARRLIGVTPFDFAVLDVNLPDGLGTDLLKEQAFGADTAVIIVTAHGGVAGAVEAMRGGAADYLVKPLEPEELPLVLERTRRSRQSARAGEHRRKGRAQEGFFFGTALQPLAAQLEKIIAADRRMQGPLPPVLIQGETGTGKTALARWLHEHGPRAEAELIEVNCPALPETLAESELFGHERGAFTDAKNTRMGLFEAAQGGTLFLDELPSLSPALQAKVLVAIEDQKIRRVGGNKAIPVDVRIIAAAQRDLRAMVAEGGFREDLYQRLDLFRVAIPPLRERGEDIVLLAEWFLIPLSQKHRLPARTMSPAGRARLLAYHWPGNVRELAHELERAVVFEEGGELNLSHLPGGVAAPAANGQPEWLKPGFVFPESGFSLEAAINRLLQLALSQTDGNVSAAARLLGVPRDFVRYRLGLKNRVSDGN*