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berkeley_reactor_200306_planktonic_scaffold_308111

Search features with annotation key words

Displaying items 31-49 of 49 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_308111_31
BJP_IG2103_ACD39_50_23, ACD39, Bacteria

Not on your lists

33443..33823
DNA (381bp) protein (127aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2BTR4_9BACT
rhodanese domain-containing protein
Tax=BJP_IG2103_ACD39_50_23
berkeley_reactor_200306_planktonic_scaffold_308111_32
RBG_13_Planctomycetes_60_9_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

33836..34390
DNA (555bp) protein (185aa)
thioredoxin n=1 Tax=Salisaeta longa RepID=UPI0003B4B075
thioredoxin
Tax=RBG_13_Planctomycetes_60_9_curated
berkeley_reactor_200306_planktonic_scaffold_308111_33
Verrucomicrobiae bacterium DG1235, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

34479..35228
DNA (750bp) protein (250aa)
3-oxoacyl-(acyl-carrier-protein) reductase (EC:1.1.1.100)
KR domain superfamily n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JM23_9BACT
KR domain superfamily {ECO:0000313|EMBL:EDY82371.1}; TaxID=382464 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales.;" source="Verrucomicrobiae bacterium DG1235.;"
berkeley_reactor_200306_planktonic_scaffold_308111_34
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

35250..35855
DNA (606bp) protein (202aa)
Methyltransferase type 11 n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZS50_OPITP
type 11 methyltransferase
Methyltransferase type 11 {ECO:0000313|EMBL:ACB74726.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
berkeley_reactor_200306_planktonic_scaffold_308111_35
Hydrocarboniphaga effusa, Hydrocarboniphaga, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35876..36775)
DNA (900bp) protein (300aa)
hypothetical protein n=1 Tax=Singularimonas variicoloris RepID=UPI00035C15E0
Uncharacterized protein {ECO:0000313|EMBL:EIT68551.1}; TaxID=1172194 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Sinobacteraceae; Hydrocarboniphaga.;" source="Hydrocarboniphaga effusa AP103.;"
LysR family transcriptional regulator
berkeley_reactor_200306_planktonic_scaffold_308111_36
Hassallia byssoidea, Hassallia, Nostocales, Cyanobacteria, Bacteria

Not on your lists

36861..37853
DNA (993bp) protein (331aa)
hypothetical protein n=1 Tax=Fischerella muscicola RepID=UPI000379E404
Uncharacterized protein {ECO:0000313|EMBL:KIF30086.1}; TaxID=1304833 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Hassallia.;" source="Hassallia byssoidea VB512170.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_308111_37
unknown

Not on your lists

comp(38235..38579)
DNA (345bp) protein (115aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_308111_38
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(38910..42482)
DNA (3573bp) protein (1191aa)
Uncharacterized protein (Fragment) n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XPX0_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF58151.1}; Flags: Fragment;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
TIR-like domain-containing protein (DUF1863)
berkeley_reactor_200306_planktonic_scaffold_308111_39

Not on your lists

comp(42605..44089)
DNA (1485bp) protein (495aa)
Glycerol kinase {ECO:0000256|HAMAP-Rule:MF_00186, ECO:0000256|SAAS:SAAS00029376}; EC=2.7.1.30 {ECO:0000256|HAMAP-Rule:MF_00186, ECO:0000256|SAAS:SAAS00029376};; ATP:glycerol 3-phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00186}; Glycerokinase {ECO:0000256|HAMAP-Rule:MF_00186}; TaxID=743051 species="Bacteria; environmental samples.;" source="uncultured marine bacterium MedDCM-OCT-S04-C123.;"
Glycerol kinase n=1 Tax=uncultured marine bacterium MedDCM-OCT-S04-C123 RepID=D6PCM2_9BACT
glpK; glycerol kinase
berkeley_reactor_200306_planktonic_scaffold_308111_trna_1
unknown

Not on your lists

44213..44284
DNA (72bp)
transferRNA Thr
berkeley_reactor_200306_planktonic_scaffold_308111_40
RBG_13_Planctomycetes_46_10_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

comp(44549..45598)
DNA (1050bp) protein (350aa)
GDP-mannose 3,5-epimerase id=4343885 bin=GWF2_Planctomycetes_42_9 species=Granulicella mallensis genus=Granulicella taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=GWF2_Planctomycetes_42_9 organism_group=Planctomycetes
GDP-mannose 3,5-epimerase
Tax=RBG_13_Planctomycetes_46_10_curated
berkeley_reactor_200306_planktonic_scaffold_308111_41

Not on your lists

45770..46669
DNA (900bp) protein (300aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 89 RepID=UPI0003608ED5
Uncharacterized protein {ECO:0000313|EMBL:CBI00015.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_308111_42
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(46746..48362)
DNA (1617bp) protein (539aa)
L-aspartate oxidase {ECO:0000256|RuleBase:RU362049}; EC=1.4.3.16 {ECO:0000256|RuleBase:RU362049};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
L-aspartate oxidase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XM04_9BACT
L-aspartate oxidase
berkeley_reactor_200306_planktonic_scaffold_308111_43
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(48349..49209)
DNA (861bp) protein (287aa)
Pantothenate synthetase {ECO:0000256|HAMAP-Rule:MF_00158, ECO:0000256|SAAS:SAAS00247609}; Short=PS {ECO:0000256|HAMAP-Rule:MF_00158};; EC=6.3.2.1 {ECO:0000256|HAMAP-Rule:MF_00158, ECO:0000256|SAAS:SAAS00247611};; Pantoate--beta-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00158, ECO:0000256|SAAS:SAAS00247610}; Pantoate-activating enzyme {ECO:0000256|HAMAP-Rule:MF_00158}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
pantothenate synthetase (EC:6.3.2.1)
Pantothenate synthetase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XM05_9BACT
berkeley_reactor_200306_planktonic_scaffold_308111_44
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(49309..49635)
DNA (327bp) protein (109aa)
Glutaredoxin n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XM07_9BACT
Glutaredoxin {ECO:0000313|EMBL:EEF59135.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
glutaredoxin
berkeley_reactor_200306_planktonic_scaffold_308111_45
unknown

Not on your lists

49996..50574
DNA (579bp) protein (193aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_308111_46
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

50619..51953
DNA (1335bp) protein (445aa)
PA14 domain protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XNF1_9BACT
PA14 domain protein {ECO:0000313|EMBL:EEF58610.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
cbp32B; carbohydrate binding protein
berkeley_reactor_200306_planktonic_scaffold_308111_47
Terriglobus saanensis, Terriglobus, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(51969..53039)
DNA (1071bp) protein (357aa)
40-residue YVTN family beta-propeller repeat protein n=1 Tax=Terriglobus saanensis (strain ATCC BAA-1853 / DSM 23119 / SP1PR4) RepID=E8UZY6_TERSS
40-residue YVTN family beta-propeller repeat-containing protein
40-residue YVTN family beta-propeller repeat protein {ECO:0000313|EMBL:ADV81063.1}; Flags: Precursor;; TaxID=401053 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Terriglobus.;" source="Terriglobus saanensis (strain ATCC BAA-1853 / DSM 23119 / SP1PR4).;"
berkeley_reactor_200306_planktonic_scaffold_308111_48
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

53273..57568
DNA (4296bp) protein (1432aa)
PA14 domain protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XL26_9BACT
PA14 domain protein {ECO:0000313|EMBL:EEF59520.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
Displaying items 31-49 of 49 in total

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