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berkeley_reactor_200306_planktonic_scaffold_295472_64

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_58_30

near complete RP 49 / 55 BSCG 49 / 51 ASCG 14 / 38 MC: 1
Location: comp(77123..78724)

Top 3 Functional Annotations

Value Algorithm Source
Peptide chain release factor 3 n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9X9P7_9BACT similarity UNIREF
DB: UNIREF100
  • Identity: 79.7
  • Coverage: 527.0
  • Bit_score: 864
  • Evalue 4.20e-248
Peptide chain release factor 3 {ECO:0000256|HAMAP-Rule:MF_00072, ECO:0000256|SAAS:SAAS00089051}; Short=RF-3 {ECO:0000256|HAMAP-Rule:MF_00072};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 79.7
  • Coverage: 527.0
  • Bit_score: 864
  • Evalue 5.90e-248
peptide chain release factor 3 similarity KEGG
DB: KEGG
  • Identity: 64.9
  • Coverage: 542.0
  • Bit_score: 702
  • Evalue 7.80e-200

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Taxonomy

Pedosphaera parvula → Pedosphaera → Verrucomicrobiales → Verrucomicrobiae → Verrucomicrobia → Bacteria

Sequences

DNA sequence
Length: 1602
GTGAGCATTGCCAAAGAAATTTCAAAACGGCGCACGTTCGCCATCATCTCGCATCCGGACGCGGGCAAAACCACGTTGACGGAGAAACTCCTGCTTTACGGCGGCGCCGTGCAACTGGCGGGCTCGGTGACCGCGCGCAAAAACCAGCGCGCCACCACGTCCGACTGGATGGAGCTGGAAAAGAAGCGCGGCATTTCCATCAGTTCCACCGTGCTGCAGTTTGAATACGACGGCTATTACATCAACCTGCTGGACACGCCCGGGCACAAGGATTTTTCCGAGGACACCTATCGCGTGCTCACTGCGGTGGACGCCGTGGTGATGGTGATTGACGCCGCCAAGGGCATCGAACCGCAGACGCGCAAGTTGTTTGAAGTCTGCCGTCAGCGCGGCGTGCCGATCTTCACCTTCATGAACAAGTGCGACCGGCCGATGAAGGATCCGCTCGAACTGCTCGACGAACTGGAACGCGTGCTGGGCATTGGCGCGTTTCCGGTGAACTGGCCGATCGGCAACGGCTTTGATTTTCGCGGCGTGTATGATCGTCAAACGAGCAAGATGCATCTGTTCGAGCGCACGGTCGGCGGTCAGTTTCGCGCGCCCGTGGAGGTTGGCGACATCAACGATCCCGCCGTGCGCGGCCAACTGGACGAACAGACGTTCAACAAAACGGTCGAGGAACTGCAAATGCTCGAAACCGCCGGTGAAATTTTTGACGATGCCGCCGTGCTCGCCGGCAAAAGCACGCCGGTTTTCTTCGGCAGTGCCAGCAATAATTTCGGGGTGCAACTGCTGCTCGACGGATTTCTCAAGCATTCGCCGGCGCCGAAACCGCGGATCATGGCCGGCACGGAAATTTCGCCGGAAAATCCCGCGTTCAGCGGCTTCATCTTCAAGATCCAGGCGAACATGGATCCCAAGCATCGCGACCGCATCGCGTTCATCCGCGTCTGTTCCGGCAAGTTTGAGCGCGACATGACGGTGCATCACTCGCGTTCCGAGAAAAAAGTCCGGCTCTCCAGCTCGCACAAGATTTTCGGCAACGACCGCGAGACCGTGAACGAGGCGTATCCCGGCGACGTGATCGGCCTGGTGGGCTACGACAGTTTTGGCATTGGCGACACGCTCACGACGGACCCGAAGATTCTCTACAAGGAAATCCCGCGGTTCACGCCCGAAGCCTTCAGCTACCTGCACAATCCGAACACCGCCAAGTTCAAGCAATTTCGCCAGGGCCTGGACCAGTTGCTGCAGGAGGGCGTGATTCAGGCGCTTTACCTGCGGAATTCCTCGGTGAAAACACCGTTGCTCGCGGCCGTCGGGCCGCTGCAATTCGAAGTGGTGAAATATCGTTTGGAAAGTGAATACGGCGCGGAATCACGATTGGAATCCGCTCCGTGGAGCGTCGTGCGCTGGCTGCCGGAAGGCATCGGGGAAGACGAGTTGGACGCGTTGTCGCTGCCCACCGGCGCGAAGCTTGCCTACGACATCGGGAAAAATCCGGTGGTGTTGTTCACCAACGATTGGTCGGCGAATTATTTCGTCGAAACGAACAAAAATTACCCGCTCGCGGAACTGCCGGTGCAAACGGCGCGGGATTGA
PROTEIN sequence
Length: 534
VSIAKEISKRRTFAIISHPDAGKTTLTEKLLLYGGAVQLAGSVTARKNQRATTSDWMELEKKRGISISSTVLQFEYDGYYINLLDTPGHKDFSEDTYRVLTAVDAVVMVIDAAKGIEPQTRKLFEVCRQRGVPIFTFMNKCDRPMKDPLELLDELERVLGIGAFPVNWPIGNGFDFRGVYDRQTSKMHLFERTVGGQFRAPVEVGDINDPAVRGQLDEQTFNKTVEELQMLETAGEIFDDAAVLAGKSTPVFFGSASNNFGVQLLLDGFLKHSPAPKPRIMAGTEISPENPAFSGFIFKIQANMDPKHRDRIAFIRVCSGKFERDMTVHHSRSEKKVRLSSSHKIFGNDRETVNEAYPGDVIGLVGYDSFGIGDTLTTDPKILYKEIPRFTPEAFSYLHNPNTAKFKQFRQGLDQLLQEGVIQALYLRNSSVKTPLLAAVGPLQFEVVKYRLESEYGAESRLESAPWSVVRWLPEGIGEDELDALSLPTGAKLAYDIGKNPVVLFTNDWSANYFVETNKNYPLAELPVQTARD*