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berkeley_reactor_200306_planktonic_scaffold_295472

Search features with annotation key words

Displaying items 1-30 of 168 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_295472_1
unknown

Not on your lists

comp(1..81)
DNA (81bp) protein (27aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_295472_2
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

326..1864
DNA (1539bp) protein (513aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XBE4_9BACT
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:EEF62829.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
ECF subfamily RNA polymerase sigma-24 factor
berkeley_reactor_200306_planktonic_scaffold_295472_3
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(1942..3228)
DNA (1287bp) protein (429aa)
Phosphoribosylamine--glycine ligase {ECO:0000256|HAMAP-Rule:MF_00138}; EC=6.3.4.13 {ECO:0000256|HAMAP-Rule:MF_00138};; GARS {ECO:0000256|HAMAP-Rule:MF_00138}; Glycinamide ribonucleotide synthetase {ECO:0000256|HAMAP-Rule:MF_00138}; Phosphoribosylglycinamide synthetase {ECO:0000256|HAMAP-Rule:MF_00138}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
phosphoribosylamine/glycine ligase (EC:4.1.1.21 6.3.4.13)
Phosphoribosylamine--glycine ligase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XPG5_9BACT
berkeley_reactor_200306_planktonic_scaffold_295472_4
Desulfobacca acetoxidans, Desulfobacca, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3230..3511)
DNA (282bp) protein (94aa)
Uncharacterized protein n=1 Tax=Desulfobacca acetoxidans (strain ATCC 700848 / DSM 11109 / ASRB2) RepID=F2NDU5_DESAR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEB10442.1}; TaxID=880072 species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophaceae; Desulfobacca.;" source="Desulfobacca acetoxidans (strain ATCC 700848 / DSM 11109 / ASRB2).;"
berkeley_reactor_200306_planktonic_scaffold_295472_5
Peptococcaceae bacterium SCADC1_2_3, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3508..3714)
DNA (207bp) protein (69aa)
Uncharacterized protein n=1 Tax=Desulfobacca acetoxidans (strain ATCC 700848 / DSM 11109 / ASRB2) RepID=F2NDU6_DESAR
Uncharacterized protein {ECO:0000313|EMBL:KFD40545.1}; TaxID=1487582 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae.;" source="Peptococcaceae bacterium SCADC1_2_3.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_295472_6
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(3758..4828)
DNA (1071bp) protein (357aa)
Phosphoribosylformylglycinamidine cyclo-ligase {ECO:0000256|HAMAP-Rule:MF_00741, ECO:0000256|RuleBase:RU004370}; EC=6.3.3.1 {ECO:0000256|HAMAP-Rule:MF_00741, ECO:0000256|RuleBase:RU004370};; AIR synthase {ECO:0000256|HAMAP-Rule:MF_00741}; AIRS {ECO:0000256|HAMAP-Rule:MF_00741}; Phosphoribosyl-aminoimidazole synthetase {ECO:0000256|HAMAP-Rule:MF_00741}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Phosphoribosylformylglycinamidine cyclo-ligase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XPG6_9BACT
phosphoribosylformylglycinamidine cyclo-ligase
berkeley_reactor_200306_planktonic_scaffold_295472_7
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

5357..6796
DNA (1440bp) protein (480aa)
Putative uncharacterized protein n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IVT4_KORVE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABF39016.1}; Flags: Precursor;; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis (strain Ellin345).;"
berkeley_reactor_200306_planktonic_scaffold_295472_8
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(6936..7268)
DNA (333bp) protein (111aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU003915}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU003915};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9X9L1_9BACT
peptidylprolyl isomerase
berkeley_reactor_200306_planktonic_scaffold_295472_9
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(7411..8883)
DNA (1473bp) protein (491aa)
6-phosphogluconate dehydrogenase, decarboxylating {ECO:0000256|PIRNR:PIRNR000109}; EC=1.1.1.44 {ECO:0000256|PIRNR:PIRNR000109};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
gnd; 6-phosphogluconate dehydrogenase, decarboxylating (EC:1.1.1.44)
6-phosphogluconate dehydrogenase, decarboxylating n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XE88_9BACT
berkeley_reactor_200306_planktonic_scaffold_295472_10
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9031..9810)
DNA (780bp) protein (260aa)
Nucleotidyl transferase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W6B4_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAO55994.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
nucleotidyl transferase
berkeley_reactor_200306_planktonic_scaffold_295472_11
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9898..10887)
DNA (990bp) protein (330aa)
Aminoglycoside phosphotransferase n=1 Tax=Magnetospirillum gryphiswaldense MSR-1 v2 RepID=V6F6E7_9PROT
Aminoglycoside phosphotransferase
Aminoglycoside phosphotransferase {ECO:0000313|EMBL:CDL01095.1}; TaxID=1430440 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense MSR-1 v2.;"
berkeley_reactor_200306_planktonic_scaffold_295472_12
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(10856..11362)
DNA (507bp) protein (169aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XE87_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF61978.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_295472_13
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(11522..12340)
DNA (819bp) protein (273aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XE86_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF61977.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_295472_14
unknown

Not on your lists

12510..12815
DNA (306bp) protein (102aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_295472_15
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

12947..16021
DNA (3075bp) protein (1025aa)
Protein translocase subunit SecA n=1 Tax=Pedosphaera parvula Ellin514 PF8_9BACT">RepID=B9XPF8_9BACT
Protein translocase subunit SecA {ECO:0000256|HAMAP-Rule:MF_01382, ECO:0000256|RuleBase:RU003874}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
secA; preprotein translocase subunit SecA (ATPase, RNA helicase)
berkeley_reactor_200306_planktonic_scaffold_295472_16
GWF2_Lentisphaerae_49_21_curated, Lentisphaerae, Bacteria

Not on your lists

16070..17968
DNA (1899bp) protein (633aa)
Putative uncharacterized protein id=4162446 bin=GWF2_Lentisphaerae_49_21 species=Mucilaginibacter paludis genus=Mucilaginibacter taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWF2_Lentisphaerae_49_21 organism_group=Lentisphaerae organism_desc=Very large genome: good +
hypothetical protein
Tax=GWF2_Lentisphaerae_49_21_curated
berkeley_reactor_200306_planktonic_scaffold_295472_17
RIFOXYC12_FULL_Lentisphaerae_60_16_curated, Lentisphaerae, Bacteria

Not on your lists

19073..19957
DNA (885bp) protein (295aa)
yajF; N-acetylglucosamine kinase (EC:2.7.1.59)
N-acetylglucosamine kinase n=1 Tax=Omnitrophica bacterium SCGC AAA257-O07 RepID=UPI0003B38961
Tax=RIFOXYC12_FULL_Lentisphaerae_60_16_curated
berkeley_reactor_200306_planktonic_scaffold_295472_18
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

20513..22744
DNA (2232bp) protein (744aa)
TonB-dependent receptor n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XKR1_9BACT
TonB-dependent receptor {ECO:0000313|EMBL:EEF59554.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
ferrichrome-iron receptor
berkeley_reactor_200306_planktonic_scaffold_295472_19
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

22771..23427
DNA (657bp) protein (219aa)
TonB family protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XKR2_9BACT
TonB family protein {ECO:0000313|EMBL:EEF59555.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
tonb family protein
berkeley_reactor_200306_planktonic_scaffold_295472_20
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

23443..24114
DNA (672bp) protein (224aa)
MotA/TolQ/ExbB proton channel n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XKR3_9BACT
MotA/TolQ/ExbB proton channel {ECO:0000313|EMBL:EEF59556.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
tolQ; biopolymer transport protein, MotA/TolQ/ExbB family
berkeley_reactor_200306_planktonic_scaffold_295472_21
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

24283..24708
DNA (426bp) protein (142aa)
Biopolymer transport protein ExbD/TolR n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XKR4_9BACT
Biopolymer transport protein ExbD/TolR {ECO:0000313|EMBL:EEF59557.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
exbD; biopolymer transport protein
berkeley_reactor_200306_planktonic_scaffold_295472_22
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

24705..25130
DNA (426bp) protein (142aa)
Biopolymer transport protein ExbD/TolR n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XKR5_9BACT
Biopolymer transport protein ExbD/TolR {ECO:0000313|EMBL:EEF59558.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
exbD; biopolymer transport protein
berkeley_reactor_200306_planktonic_scaffold_295472_23
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

25127..25660
DNA (534bp) protein (178aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XKR6_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF59559.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_295472_24
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(25709..26974)
DNA (1266bp) protein (422aa)
Isocitrate dehydrogenase [NADP] {ECO:0000256|RuleBase:RU004446}; EC=1.1.1.42 {ECO:0000256|RuleBase:RU004446};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Isocitrate dehydrogenase [NADP] n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XJ05_9BACT
NADP-dependent isocitrate dehydrogenase
berkeley_reactor_200306_planktonic_scaffold_295472_25
Microcoleus vaginatus, Microcoleus, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(27056..28819)
DNA (1764bp) protein (588aa)
Cna B domain protein n=1 Tax=Microcoleus vaginatus FGP-2 RepID=F5UHL3_9CYAN
hypothetical protein
Cna B domain protein {ECO:0000313|EMBL:EGK87700.1}; TaxID=756067 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Microcoleus.;" source="Microcoleus vaginatus FGP-2.;"
berkeley_reactor_200306_planktonic_scaffold_295472_26
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(28951..30885)
DNA (1935bp) protein (645aa)
1-deoxy-D-xylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897}; EC=2.2.1.7 {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897};; 1-deoxyxylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
1-deoxy-D-xylulose-5-phosphate synthase (EC:2.2.1.7)
1-deoxy-D-xylulose-5-phosphate synthase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XJ04_9BACT
berkeley_reactor_200306_planktonic_scaffold_295472_27
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(30912..31178)
DNA (267bp) protein (89aa)
Exodeoxyribonuclease 7 small subunit {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198685}; EC=3.1.11.6 {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198686};; Exodeoxyribonuclease VII small subunit {ECO:0000256|HAMAP-Rule:MF_00337}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Exodeoxyribonuclease 7 small subunit n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XJ03_9BACT
exonuclease VII small subunit
berkeley_reactor_200306_planktonic_scaffold_295472_28
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(31308..32672)
DNA (1365bp) protein (455aa)
Exodeoxyribonuclease 7 large subunit {ECO:0000256|HAMAP-Rule:MF_00378, ECO:0000256|SAAS:SAAS00195504}; EC=3.1.11.6 {ECO:0000256|HAMAP-Rule:MF_00378, ECO:0000256|SAAS:SAAS00195506};; Exodeoxyribonuclease VII large subunit {ECO:0000256|HAMAP-Rule:MF_00378}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Exodeoxyribonuclease 7 large subunit n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XJ00_9BACT
xseA; exodeoxyribonuclease VII large subunit
berkeley_reactor_200306_planktonic_scaffold_295472_29
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(32883..33383)
DNA (501bp) protein (167aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU000493}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU000493};; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XK09_9BACT
cyclophilin type peptidyl-prolyl cis-trans isomerase
berkeley_reactor_200306_planktonic_scaffold_295472_30
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(33434..34066)
DNA (633bp) protein (211aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU000493}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU000493};; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XK09_9BACT
peptidyl-prolyl cis-trans isomerase
Displaying items 1-30 of 168 in total

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