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berkeley_reactor_200306_planktonic_scaffold_295472

Search features with annotation key words

Displaying items 151-168 of 168 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_295472_148
Verrucomicrobiae bacterium DG1235, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

173192..174565
DNA (1374bp) protein (458aa)
Magnesium transporter n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JQU4_9BACT
Magnesium transporter MgtE {ECO:0000256|RuleBase:RU362011}; TaxID=382464 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales.;" source="Verrucomicrobiae bacterium DG1235.;"
magnesium transporter
berkeley_reactor_200306_planktonic_scaffold_295472_149
Granulicella tundricola, Granulicella, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(174624..175079)
DNA (456bp) protein (152aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 89 RepID=UPI00036BE623
cupin
Cupin 2 conserved barrel domain protein {ECO:0000313|EMBL:ADW67134.1}; TaxID=1198114 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Granulicella.;" source="Granulicella tundricola (strain ATCC BAA-1859 / DSM 23138 / MP5ACTX9).;"
berkeley_reactor_200306_planktonic_scaffold_295472_150
Hyphomonas chukchiensis, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

175147..175614
DNA (468bp) protein (156aa)
transcriptional regulator, MarR family protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001746629
Uncharacterized protein {ECO:0000313|EMBL:KCZ56689.1}; TaxID=1280947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas chukchiensis.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_295472_151
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

176252..176557
DNA (306bp) protein (102aa)
RNP-1 like RNA-binding protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D7E3_9BACT
RNP-1 like RNA-binding protein {ECO:0000313|EMBL:EDY17560.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
RNP-1 like RNA-binding protein
berkeley_reactor_200306_planktonic_scaffold_295472_152
Opitutaceae bacterium TAV5, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

176772..177287
DNA (516bp) protein (172aa)
Glyoxalase/bleomycin resistance protein/dioxygenase n=2 Tax=unclassified Opitutaceae RepID=H1ILU3_9BACT
glyoxalase
Glyoxalase {ECO:0000313|EMBL:AHF92623.1}; TaxID=794903 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV5.;"
berkeley_reactor_200306_planktonic_scaffold_295472_153
RIFOXYB12_FULL_Lentisphaerae_65_16_curated, Lentisphaerae, Bacteria

Not on your lists

comp(177752..177949)
DNA (198bp) protein (66aa)
hypothetical protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001746B22
hypothetical protein
Tax=RIFOXYB12_FULL_Lentisphaerae_65_16_curated
berkeley_reactor_200306_planktonic_scaffold_295472_154

Not on your lists

comp(178157..179503)
DNA (1347bp) protein (449aa)
Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfomicrobium baculatum (strain DSM 4028 / VKM B-1378) RepID=C7LX78_DESBD
Marine sediment metagenome DNA, contig: S01H1_L06952 {ECO:0000313|EMBL:GAF67262.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
Fis family two component sigma5-4 specific transcriptional regulator
berkeley_reactor_200306_planktonic_scaffold_295472_155
GWA2_OP11_43_10, Beckwithbacteria, Microgenomates, Bacteria

Not on your lists

179868..180707
DNA (840bp) protein (280aa)
Type 11 methyltransferase n=1 Tax=uncultured bacterium RepID=K2DL96_9BACT
Methyltransferase type 11 {ECO:0000313|EMBL:KKS80486.1}; Flags: Fragment;; TaxID=1618369 species="Bacteria; Microgenomates.;" source="Microgenomates (Beckwithbacteria) bacterium GW2011_GWA2_43_10.;"
methyltransferase
berkeley_reactor_200306_planktonic_scaffold_295472_156
RHI_OP11_Daviesbacteria_43_11, Daviesbacteria, Microgenomates, Bacteria

Not on your lists

180909..181922
DNA (1014bp) protein (338aa)
Dolichyl-phosphate mannose synthase related protein id=4150669 bin=GWC2_Planctomycete_KSU_39_26 species=ACD48 genus=ACD48 taxon_order=ACD48 taxon_class=ACD48 phylum=OP11 tax=GWC2_Planctomycete_KSU_39_26 organism_group=Planctomycetes
glycosyl transferase family protein
Tax=RIFCSPHIGHO2_12_FULL_OP11_Daviesbacteria_43_11_curated
berkeley_reactor_200306_planktonic_scaffold_295472_157
unknown

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comp(181964..182101)
DNA (138bp) protein (46aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_295472_158
RBG_13_OP11_Beckwithbacteria_35_6_curated, Beckwithbacteria, Microgenomates, Bacteria

Not on your lists

182246..183166
DNA (921bp) protein (307aa)
Glycosyltransferase id=4951040 bin=GWC2_Planctomycete_KSU_39_26 species=Desulfovibrio magneticus genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Planctomycete_KSU_39_26 organism_group=Planctomycetes
glycosyltransferase
Tax=RBG_13_OP11_Beckwithbacteria_35_6_curated
berkeley_reactor_200306_planktonic_scaffold_295472_159
Xanthomonas axonopodis, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(183260..184009)
DNA (750bp) protein (250aa)
hypothetical protein n=1 Tax=Geminocystis herdmanii RepID=UPI00034C99B8
Methyltransferase {ECO:0000313|EMBL:KHD61105.1}; TaxID=317013 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas axonopodis pv. phaseoli.;"
methyltransferase FkbM family
berkeley_reactor_200306_planktonic_scaffold_295472_160
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

184786..187134
DNA (2349bp) protein (783aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XIQ0_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF60313.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_295472_161
Cyanobacterium aponinum, Cyanobacterium, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

187149..188081
DNA (933bp) protein (311aa)
NAD-dependent epimerase/dehydratase n=1 Tax=Cyanobacterium aponinum (strain PCC 10605) RepID=K9Z329_CYAAP
NAD-dependent epimerase/dehydratase
NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:AFZ53127.1}; TaxID=755178 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Cyanobacterium.;" source="Cyanobacterium aponinum (strain PCC 10605).;"
berkeley_reactor_200306_planktonic_scaffold_295472_162
Geminocystis sp. NIES-3708, Geminocystis, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

188181..188915
DNA (735bp) protein (245aa)
Nucleotidyl transferase n=1 Tax=Cyanothece sp. (strain PCC 8801) RepID=B7JVZ8_CYAP8
D-glycero-D-manno-heptose 1-phosphate guanosyltransferase {ECO:0000313|EMBL:BAQ61767.1}; TaxID=1615909 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Geminocystis.;" source="Geminocystis sp. NIES-3708.;"
nucleotidyltransferase
berkeley_reactor_200306_planktonic_scaffold_295472_163
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

188921..189439
DNA (519bp) protein (173aa)
hypothetical protein n=1 Tax=filamentous cyanobacterium ESFC-1 RepID=UPI000367F7E0
NUDIX hydrolase
NUDIX hydrolase {ECO:0000313|EMBL:ABJ81579.1}; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
berkeley_reactor_200306_planktonic_scaffold_295472_164
Candidatus Brocadia sinica, Candidatus Brocadia, Candidatus Brocadiales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

189484..190560
DNA (1077bp) protein (359aa)
Predicted kinase related to galactokinase and mevalonate kinase (EC:2.7.1.168)
Putative galactokinase/mevalonate kinase {ECO:0000313|EMBL:GAN35082.1}; TaxID=1197129 species="Bacteria; Planctomycetes; Planctomycetia; Candidatus Brocadiales; Candidatus Brocadiaceae; Candidatus Brocadia.;" source="Candidatus Brocadia sinica JPN1.;"
kinase; Galactokinase/homoserine kinase family protein, partial id=4148435 bin=GWF2_Geobacter_54_21 species=Gemmata obscuriglobus genus=Gemmata taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWF2_Geobacter_54_21 organism_group=Deltaproteobacteria organism_desc=Good
berkeley_reactor_200306_planktonic_scaffold_295472_165
R_WOR_2_48_11, WOR-2, Bacteria

Not on your lists

190642..191934
DNA (1293bp) protein (431aa)
Tax=RIFCSPHIGHO2_02_FULL_WOR_2_48_11_curated
Displaying items 151-168 of 168 in total

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