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berkeley_reactor_200306_planktonic_scaffold_295472

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Displaying items 31-60 of 168 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_295472_31
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(34123..35412)
DNA (1290bp) protein (430aa)
fzeB; esterase lipase family protein FzeB (EC:3.1.1.-)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XS19_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF57351.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_295472_32
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(35409..35885)
DNA (477bp) protein (159aa)
hypothetical protein n=1 Tax=Verrucomicrobia bacterium SCGC AAA164-I21 RepID=UPI00037171BC
Uncharacterized protein {ECO:0000313|EMBL:EDY16545.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_295472_33
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

36063..36587
DNA (525bp) protein (175aa)
Lipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|SAAS:SAAS00112541}; EC=3.4.23.36 {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|SAAS:SAAS00112508};; Prolipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161}; Signal peptidase II {ECO:0000256|HAMAP-Rule:MF_00161}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Lipoprotein signal peptidase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XQ40_9BACT
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_295472_34
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

36678..37634
DNA (957bp) protein (319aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Pseudouridine synthase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XQ39_9BACT
pseudouridine synthase, RluA family
berkeley_reactor_200306_planktonic_scaffold_295472_35
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(37646..38731)
DNA (1086bp) protein (362aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D323_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY19134.1}; Flags: Precursor;; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
Ig domain-containing protein
berkeley_reactor_200306_planktonic_scaffold_295472_36
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(38781..39740)
DNA (960bp) protein (320aa)
NAD-dependent epimerase/dehydratase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XCT2_9BACT
NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:EEF62278.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
NAD-dependent epimerase/dehydratase
berkeley_reactor_200306_planktonic_scaffold_295472_37
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(39760..40833)
DNA (1074bp) protein (358aa)
N-acetylmuramoyl-L-alanine amidase {ECO:0000313|EMBL:EEF62279.1}; EC=3.5.1.28 {ECO:0000313|EMBL:EEF62279.1};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
N-acetylmuramoyl-L-alanine amidase (EC:3.5.1.28)
N-acetylmuramoyl-L-alanine amidase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XCT3_9BACT
berkeley_reactor_200306_planktonic_scaffold_295472_38

Not on your lists

41089..41718
DNA (630bp) protein (210aa)
Aromatic acid decarboxylase {ECO:0000256|RuleBase:RU362054}; EC=4.1.1.- {ECO:0000256|RuleBase:RU362054};; TaxID=710817 species="Bacteria; environmental samples.;" source="uncultured bacterium HF770_11D24.;"
hypothetical protein n=1 Tax=Verrucomicrobia bacterium SCGC AAA164-E04 RepID=UPI00035C8B66
ubiX; 3-polyprenyl-4-hydroxybenzoate decarboxylase
berkeley_reactor_200306_planktonic_scaffold_295472_39
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

41859..42755
DNA (897bp) protein (299aa)
4-hydroxybenzoate polyprenyltransferase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XCT6_9BACT
4-hydroxybenzoate polyprenyltransferase {ECO:0000313|EMBL:EEF62282.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
menaquinone biosynthesis polyprenyltransferase
berkeley_reactor_200306_planktonic_scaffold_295472_40
RBG_16_Planctomycetes_64_12_curated, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

42963..46760
DNA (3798bp) protein (1266aa)
Serine/threonine protein kinase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D528_9BACT
serine/threonine protein kinase
Tax=RBG_16_Planctomycetes_64_12_curated
berkeley_reactor_200306_planktonic_scaffold_295472_41
RIFOXYB12_FULL_Lentisphaerae_65_16_curated, Lentisphaerae, Bacteria

Not on your lists

46991..47740
DNA (750bp) protein (250aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XQ22_9BACT
RNA polymerase sigma-70 factor
Tax=RIFOXYB12_FULL_Lentisphaerae_65_16_curated
berkeley_reactor_200306_planktonic_scaffold_295472_42
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

47803..47997
DNA (195bp) protein (65aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XK11_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF59834.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_295472_43
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

48078..48635
DNA (558bp) protein (186aa)
NUDIX hydrolase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XK12_9BACT
NUDIX hydrolase {ECO:0000313|EMBL:EEF59835.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
nudix hydrolase
berkeley_reactor_200306_planktonic_scaffold_295472_44
Rhodopirellula maiorica, Rhodopirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

48899..49510
DNA (612bp) protein (204aa)
Pathogenesis-related transcriptional factor and ERF protein n=1 Tax=Rhodopirellula maiorica SM1 RepID=M5RID2_9PLAN
Pathogenesis-related transcriptional factor and ERF protein {ECO:0000313|EMBL:EMI18946.1}; TaxID=1265738 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Rhodopirellula.;" source="Rhodopirellula maiorica SM1.;"
Pathogenesis-related transcriptional factor and ERF protein
berkeley_reactor_200306_planktonic_scaffold_295472_45
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

49563..49940
DNA (378bp) protein (126aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XIU6_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF60173.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_295472_46
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(50083..50379)
DNA (297bp) protein (99aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9X9U6_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF63247.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_295472_47
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

50693..54448
DNA (3756bp) protein (1252aa)
Uncharacterized protein n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZVA1_OPITP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACB76768.1}; Flags: Precursor;; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
berkeley_reactor_200306_planktonic_scaffold_295472_48
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

54427..56619
DNA (2193bp) protein (731aa)
Surface antigen (D15) n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZV96_OPITP
surface antigen (D15)
Surface antigen (D15) {ECO:0000313|EMBL:ACB76767.1}; Flags: Precursor;; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
berkeley_reactor_200306_planktonic_scaffold_295472_49
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(56695..59031)
DNA (2337bp) protein (779aa)
Primosomal protein N' {ECO:0000256|HAMAP-Rule:MF_00983}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00983};; ATP-dependent helicase PriA {ECO:0000256|HAMAP-Rule:MF_00983}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Primosomal protein N n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XLJ1_9BACT
primosomal protein N'
berkeley_reactor_200306_planktonic_scaffold_295472_50
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(59158..59853)
DNA (696bp) protein (232aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XLI8_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF59236.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_295472_51
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(59863..60465)
DNA (603bp) protein (201aa)
Holliday junction ATP-dependent DNA helicase RuvA {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058935}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058896};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Holliday junction ATP-dependent DNA helicase RuvA n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XLI7_9BACT
Holliday junction DNA helicase RuvA
berkeley_reactor_200306_planktonic_scaffold_295472_52
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(60583..61164)
DNA (582bp) protein (194aa)
Crossover junction endodeoxyribonuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106335}; EC=3.1.22.4 {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106388};; Holliday junction nuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; Holliday junction resolvase RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
crossover junction endodeoxyribonuclease RuvC (EC:3.1.22.4)
Crossover junction endodeoxyribonuclease RuvC n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XLI6_9BACT
berkeley_reactor_200306_planktonic_scaffold_295472_53
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(61279..62964)
DNA (1686bp) protein (562aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XBM5_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF62910.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_295472_54
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

63313..64194
DNA (882bp) protein (294aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XCN5_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF62231.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_295472_55
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

64196..64816
DNA (621bp) protein (207aa)
Guanylate kinase {ECO:0000256|SAAS:SAAS00021750}; EC=2.7.4.8 {ECO:0000256|SAAS:SAAS00036702};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Guanylate kinase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XCN6_9BACT
guanylate kinase
berkeley_reactor_200306_planktonic_scaffold_295472_56
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

64918..65460
DNA (543bp) protein (181aa)
Phosphopantothenoylcysteine decarboxylase {ECO:0000313|EMBL:EEF60936.1}; EC=4.1.1.36 {ECO:0000313|EMBL:EEF60936.1};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Phosphopantothenoylcysteine decarboxylase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XH15_9BACT
phosphopantothenate--cysteine ligase
berkeley_reactor_200306_planktonic_scaffold_295472_57
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

65467..66858
DNA (1392bp) protein (464aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein n=1 Tax=unclassified Verrucomicrobia (miscellaneous) RepID=UPI000380392E
histidine kinase
berkeley_reactor_200306_planktonic_scaffold_295472_58
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

66855..68246
DNA (1392bp) protein (464aa)
hypothetical protein n=1 Tax=unclassified Verrucomicrobia (miscellaneous) RepID=UPI00037F33C6
Putative two component, sigma54 specific, transcriptional regulator, Fis family {ECO:0000313|EMBL:EEF60934.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
acetoacetate metabolism regulatory protein AtoC
berkeley_reactor_200306_planktonic_scaffold_295472_59
unknown

Not on your lists

68243..68488
DNA (246bp) protein (82aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_295472_60
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

68491..69360
DNA (870bp) protein (290aa)
squalene synthase (EC:2.5.1.32)
Squalene synthase HpnD n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XH10_9BACT
Squalene synthase HpnD {ECO:0000313|EMBL:EEF60931.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Displaying items 31-60 of 168 in total

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