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berkeley_reactor_200306_planktonic_scaffold_295472_60

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_58_30

near complete RP 49 / 55 BSCG 49 / 51 ASCG 14 / 38 MC: 1
Location: 68491..69360

Top 3 Functional Annotations

Value Algorithm Source
squalene synthase (EC:2.5.1.32) similarity KEGG
DB: KEGG
  • Identity: 43.8
  • Coverage: 276.0
  • Bit_score: 233
  • Evalue 7.30e-59
Squalene synthase HpnD n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XH10_9BACT similarity UNIREF
DB: UNIREF100
  • Identity: 67.5
  • Coverage: 289.0
  • Bit_score: 384
  • Evalue 6.90e-104
Squalene synthase HpnD {ECO:0000313|EMBL:EEF60931.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 67.5
  • Coverage: 289.0
  • Bit_score: 384
  • Evalue 9.70e-104

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Taxonomy

Pedosphaera parvula → Pedosphaera → Verrucomicrobiales → Verrucomicrobiae → Verrucomicrobia → Bacteria

Sequences

DNA sequence
Length: 870
ATGCAGCAAAGCCGCGCGCTCACCAAAAAAAGCGCCTCCAATCTCGCGCTCGCTTTTATTCTCCTGCCGCGTGAAAAACGGGACGCCATGTCCGCGCTTTACGCCTTTTGCCGCGCCGTGGATGACGTTGCCGACGAAGATTCCATCCCCACCGAGCAACGCCGCGAACAGCTCGCCGCCTGGCGCGAGGACATCCGGCTGGCCTGCGAAAATCGGGCGCCCAAGTTTGCGTTGAATCGCGAATTTGCCCCCGTCATCCAGCGGTTCAAGCTGCCGTTCACGCTCATGGATGAAATCATCAAAGGCTGTGAGATGGATTTGACCACGCTGCGCTACGAGAATTATGAACGGCTCGAACTTTATTGCTATCGGGTCGCCTCAGCGGTCGGCCTGTTGAGCATCGAAATTTTCGGCCACCAAAACGCCGCCTGCCGGGACTATGCGGTTTACCTGGGCAAGGCCCTGCAACTCACCAATATTTTGCGCGATGTCAAAAACGACGCCGAACGTGGCCGCATTTATCTGCCGCTGACCGAACTGAAACAATTCGGTGTCAGCGAAGCGGAGATTTTGGCGGGCAGCTATTCCGAACGTTATTTTGCCCTCGCCCGCAGCGTGGCGGAACACGCCCGGAATTTCTACCGCCTGGCCCGGGAAACCCTGCCGCCGGAAGACCGCAAGTCCATGGTGGCCGCCGAATTGATGGGTTCCGTTTACTGGCAGTTGTTGAGAAAATTGGAACGCGGAAAATTTGATGTCTTCGGCGTGAAACCATTGAAGTTGAGCAAGCCCCACAAGCTCGCGCTCATTCTGCGTTCCTGGCTGCGCCACGCGGTCAACTCCTCCGCGCCCCGCTACGGACAACCCTGA
PROTEIN sequence
Length: 290
MQQSRALTKKSASNLALAFILLPREKRDAMSALYAFCRAVDDVADEDSIPTEQRREQLAAWREDIRLACENRAPKFALNREFAPVIQRFKLPFTLMDEIIKGCEMDLTTLRYENYERLELYCYRVASAVGLLSIEIFGHQNAACRDYAVYLGKALQLTNILRDVKNDAERGRIYLPLTELKQFGVSEAEILAGSYSERYFALARSVAEHARNFYRLARETLPPEDRKSMVAAELMGSVYWQLLRKLERGKFDVFGVKPLKLSKPHKLALILRSWLRHAVNSSAPRYGQP*