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berkeley_reactor_200306_planktonic_scaffold_295472_41

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_58_30

near complete RP 49 / 55 BSCG 49 / 51 ASCG 14 / 38 MC: 1
Location: 46991..47740

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XQ22_9BACT similarity UNIREF
DB: UNIREF100
  • Identity: 53.7
  • Coverage: 231.0
  • Bit_score: 247
  • Evalue 8.70e-63
RNA polymerase sigma-70 factor similarity KEGG
DB: KEGG
  • Identity: 51.2
  • Coverage: 242.0
  • Bit_score: 222
  • Evalue 8.50e-56
Tax=RIFOXYB12_FULL_Lentisphaerae_65_16_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 55.1
  • Coverage: 234.0
  • Bit_score: 256
  • Evalue 2.00e-65

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Taxonomy

RIFOXYB12_FULL_Lentisphaerae_65_16_curated → Lentisphaerae → Bacteria

Sequences

DNA sequence
Length: 750
ATGATTAAAATGACTGCCGAAGGTTCTTCCGACACGTCCCGCGATATTTTTGCCACCACGCATTGGACGGTGGTGCTCGCCGCCGGCAAACGGCACACCGCGCAAGCCGACCGCGCGCTGGAGGAACTTTGCCGCACTTACTGGTTTCCGCTTTATGCCTACGTCCGGCGGCGCGGACTTTCCAGGGAGGACGCGGAAGATGTGACGCAGGCGTTTTTCGCGCGCTTTCTGGCGAAGAATTACCTCGCCGGCCTGAGCGCCGAGCGCGGGCGGTTCCGCGCGTTTCTGCTGGCGTCACTGAAACATTTTCTGGCGAACGAGTGGGACAAGGCACGAACACAAAAACGCGGCAGCGGTGAAATCCACCTTTCCCTGGACTGGCAGACGGCGGACACGAAGTTCCAGGTGGCGGCGACAAACGAGCCGAGTCCGGACCAGGCGTATGATCGCGAGTGGGCGCTGGCGCTGCTGGCCAAAGTGATTGACCGGCTGCAAGCCGAATGCGCGGCGGAAGGCAAAACGAAGCTGTTCACGCAGTTGAAAGTTTTTCTCACCGTTGGCAAAGATGAATCGGCGCAGGCGGACATTGCCAAATCACTGGGCATGGAGGAAGGCGCGGTGCGCGTGGCGATTCACCGGTTGCGGAAACGGTATCGGCAATTGTTGCGGGACGAAATCGCCAACACGTTGAGCGATCCAGCGATGGTGGACGAGGAAATGCGGGCGTTGTTCGGGGCGTTCGGGACTTGA
PROTEIN sequence
Length: 250
MIKMTAEGSSDTSRDIFATTHWTVVLAAGKRHTAQADRALEELCRTYWFPLYAYVRRRGLSREDAEDVTQAFFARFLAKNYLAGLSAERGRFRAFLLASLKHFLANEWDKARTQKRGSGEIHLSLDWQTADTKFQVAATNEPSPDQAYDREWALALLAKVIDRLQAECAAEGKTKLFTQLKVFLTVGKDESAQADIAKSLGMEEGAVRVAIHRLRKRYRQLLRDEIANTLSDPAMVDEEMRALFGAFGT*