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berkeley_reactor_200306_planktonic_scaffold_295472_2

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_58_30

near complete RP 49 / 55 BSCG 49 / 51 ASCG 14 / 38 MC: 1
Location: 326..1864

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XBE4_9BACT similarity UNIREF
DB: UNIREF100
  • Identity: 39.2
  • Coverage: 510.0
  • Bit_score: 312
  • Evalue 7.70e-82
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:EEF62829.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 39.2
  • Coverage: 510.0
  • Bit_score: 312
  • Evalue 1.10e-81
ECF subfamily RNA polymerase sigma-24 factor similarity KEGG
DB: KEGG
  • Identity: 38.1
  • Coverage: 286.0
  • Bit_score: 167
  • Evalue 6.70e-39

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Taxonomy

Pedosphaera parvula → Pedosphaera → Verrucomicrobiales → Verrucomicrobiae → Verrucomicrobia → Bacteria

Sequences

DNA sequence
Length: 1539
ATGGTTTGCAATACACATTCGGCAGAGGACGTCGCGCAAGGCGTATTCGTAGCGCTCGCAAAAAGCGCCCGGCAGCTCGTGGGCTGCATCGCCTTGGAAGGCTGGTTGCACAATGCAACCCGAAATCTTGCAGCTAACGCGGTCCGAGCGGAAATCCGGCGCCGCGACCGGGAACAAGAATCTGCCATCATGAATGAAATACTTTCCGATAGCGCGGACGTAAAATGGGAACACATCGCTCCTTGTCTCGATGAGGCTTTGAGTGAATTGAGTGAGCTGGAACGCGAAGCGCTAATACTCCGCTATTTCAAAAATCACGACTTTCGCAGTGTCGGAGCAATACTTGGCATTAGCGACGATACAGCACAAAAACGCGTGAGTCGCGCGGTGGAAAAATTGCGGGAATATTTTTCCAAACGAAAAATCACCGTCGGAGTGGGCGGGCTCGTCGCCCTGATTTCCGCCAATGCTGTTCAATCCGCCCCCATCGGATTAGCTGTCAGTATTTCCGCCGCCGCACTTGCGGGGACAGCCGCTGCCACTTCAACCTTTATTGCCGCCGCCAAAACCATTGCCATGACGACACTCCAGAAAACTCTCGTTACCGCCACCGTGGCTGTGCTCGCCAGCGCGGGCATTTACGAAGCCAAACAAGCTCACAACGCGCGAAATGCCGTCGCGAAACTACAAGCCGAACAAGCACCGTTGGCGATGGAAATTGCACGGTTGCAGGCTGAAGCCAACAAGCTCTCTGTGTTGCTGGCGGATGCAAAAAATCAAAAGCAATTAACGCAGGCGCAATTCAATGAGTTGTTGAAGCTTCGTGGACAAATGGGTGTCATCAAGCAGGCAAACGCAGAAGTCGAAAATGATCCGGCCTTTCAGAAGGCCCAAACGTGGTTGGCCAAATGCAAAAAAATTCAGGAACAATTTGATTTGCACCCGGAGCAGAAAATTCCGGAAATGCAATTTCTCACAGAAGAAGACTGGCTGGATCATGCCCGACATGCTGATGTGGATACCGCCAATGGATTGCGCATTGCCTTGAGTAATATCCGGGCGACGGCAAGTGGTATTTTTGCCGAAAAATTCGCGTTGGCCTTGCAAGCCTACATGGCGGCAAATCACCAGCAACTACCCGCGACGGCATCTCAAGTGGCCGGCTATTTTAACCCTCCGCTGCAAGATACGGACGCGATTTTTTTGCGTTATGTTGTTCCAGCGGCGTCCGACTCATTTTTTGCTATGAATCCAAGCATGACCAATATCCTGTTTGTGCAGGATAAATCTACAGTTGTGGATACTGCCTTGGATCAACGTGTGGCGTTCGGCCCACATGAAACCTTCTGGCTTCCTCCGCTGCAACCGTCACTGATGAATTCAGTGTTGCCTCCAGAAATGGAGGCGGTGGCAAAGGCATATTCGGATGCAAACGGCGTGGGATTTTACAACCCCATCGACCTCAAGCCTTATGCCACCACACCGGAACAAAAGGCGGCGCTCAACAAATTTATTTTATCACTTACCCCAACTCGGTAA
PROTEIN sequence
Length: 513
MVCNTHSAEDVAQGVFVALAKSARQLVGCIALEGWLHNATRNLAANAVRAEIRRRDREQESAIMNEILSDSADVKWEHIAPCLDEALSELSELEREALILRYFKNHDFRSVGAILGISDDTAQKRVSRAVEKLREYFSKRKITVGVGGLVALISANAVQSAPIGLAVSISAAALAGTAAATSTFIAAAKTIAMTTLQKTLVTATVAVLASAGIYEAKQAHNARNAVAKLQAEQAPLAMEIARLQAEANKLSVLLADAKNQKQLTQAQFNELLKLRGQMGVIKQANAEVENDPAFQKAQTWLAKCKKIQEQFDLHPEQKIPEMQFLTEEDWLDHARHADVDTANGLRIALSNIRATASGIFAEKFALALQAYMAANHQQLPATASQVAGYFNPPLQDTDAIFLRYVVPAASDSFFAMNPSMTNILFVQDKSTVVDTALDQRVAFGPHETFWLPPLQPSLMNSVLPPEMEAVAKAYSDANGVGFYNPIDLKPYATTPEQKAALNKFILSLTPTR*