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berkeley_reactor_200306_planktonic_scaffold_295472_78

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_58_30

near complete RP 49 / 55 BSCG 49 / 51 ASCG 14 / 38 MC: 1
Location: 95302..96945

Top 3 Functional Annotations

Value Algorithm Source
radical SAM protein n=1 Tax=Schlesneria paludicola RepID=UPI00029B05F6 similarity UNIREF
DB: UNIREF100
  • Identity: 57.0
  • Coverage: 556.0
  • Bit_score: 607
  • Evalue 1.20e-170
Radical SAM domain protein {ECO:0000313|EMBL:EEF58747.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 59.8
  • Coverage: 542.0
  • Bit_score: 602
  • Evalue 4.30e-169
radical SAM protein similarity KEGG
DB: KEGG
  • Identity: 55.6
  • Coverage: 543.0
  • Bit_score: 584
  • Evalue 2.40e-164

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Taxonomy

Pedosphaera parvula → Pedosphaera → Verrucomicrobiales → Verrucomicrobiae → Verrucomicrobia → Bacteria

Sequences

DNA sequence
Length: 1644
ATGGTGGTCGCGATGCCGGACATTGTCCTCACCACGCTCAACGCCAAGTTTATTCACGCGGCGTTCGGGCTGCGTTACTTGTTTGCCAATCTTGGCGAATTGCAGCCGCGCGCCGTCATCGCGGAGTTCGACATCAACCTGCGCCCGCTGGACATCGCCGAGGCATTGCTGGCGCGCCTGGAACGCCGGGCTTCTGTCCGGCAAGCTGAGGCCGGCAGCTCCGCACCCGCCGATCCGGCGACCAGCGTTCCGGTGCCGCAAATCATCGGCTTTGGCGTTTATATCTGGAACGTGACGGAAACCGCCGAAGTAATCGCCATCATCAAGCGCGTGCGGCCGGACATCATCATTATTCTGGGCGGTCCGGAGGTGAGTCATGAAACCGCAGGCCAGCCGGTTGTGGCGCTGGCGGATCACGTCATTACCGGCGAGGCGGATTTAAAATTTGCGGAAGTGTGCCGGGAACTCCTGCGCAGCGGCCCGCGAGAACATCCGCCCCACCCGCTGCCCAAAATCATTCCCGCCGAAGTGCCGGATTTTTCCAGCCTCGTCCTGCCCTACGAATTCTACACCGCCGCGGACCTGGCGCACCGCATCGTCTATGTGGAGGCTTCGCGCGGCTGTCCGTTCACCTGCGAATTTTGCCTGTCCTCGCTCGACATCCCCGTGCGCGCCGCGCCGCTCGAAAAATTCCTCGGCGAAATGCGGAAGCTGCTCGATCGCGGGTTGAAACAATTCAAGTTCGTGGACCGCACGTTCAATCTGAACGTTGCCACCAGCAAGGCCATTTTGGAATTCTTCCTCGCCCGCCATCAGCCGGGAAATTTTTATCATTTCGAGATGATTCCCGACCGGCTGCCGCCGGACCTCCGCGCCATCATCGCCCAATTTCCCCCCGGCTCGCTGCAATTTGAAGTCGGCATCCAGACCTTCAATCCCGCAGTCGGCCAGAACATCAGCCGGCGCCAGAACTACGCGCGCCTGGCGGATAATTTTAATTTTCTGCGCCGCGAAACCGGTGTTCACATTCACGCCGATCTCATTGCCGGCCTGCCCGGCGAAACCCTGGACAGTTTCGCCGCCGGCTTCGACCGCCTGGTCGCGCTCGGCCCGCAGGAAATCCAGGTGGGCATTCTCAAACGACTGCGCGGCACGCCCATCGTCCGGCACGATGCGGCATGGCAAATGGTTTACAACACGCATCCGCCCTACGAAATTTTGCAGAACAAACTGATGGATTTCGCCCTGATGCAACGGCTGCGCCGGTTCGCCAAGTATTGGGATTTGATCGGCAACAGCGGAAACTTCGTCGCGACCGCCCCGTTGATCTGGAGCGATGCCGCCTCACCCGCCTCGCCGTTCCATTCTTTCCTGCGCTTGAGCGACTGGCTTTACGAACAGCTCCGGCGCACCGACAGCATCGCGCTGATGCGCTTGATGGAATTGCTGTTCGCATTCCTGACGCAGGAGCGGAAGCTCGACGCCCGCGGGGTGGCGGAAACCTTTTGGCGCGATTGCCGGCGCACCGGCCGCCGCGACGCGCCGAACTTTCTGGAGGCGTATTTGCCGGCGGAAAACTGGTCCGCCATTCGCGAGCGCGACCGCTCCCTGCCCAAGCGCCAGTCGCGTCACCTGGCCGTTTGA
PROTEIN sequence
Length: 548
MVVAMPDIVLTTLNAKFIHAAFGLRYLFANLGELQPRAVIAEFDINLRPLDIAEALLARLERRASVRQAEAGSSAPADPATSVPVPQIIGFGVYIWNVTETAEVIAIIKRVRPDIIIILGGPEVSHETAGQPVVALADHVITGEADLKFAEVCRELLRSGPREHPPHPLPKIIPAEVPDFSSLVLPYEFYTAADLAHRIVYVEASRGCPFTCEFCLSSLDIPVRAAPLEKFLGEMRKLLDRGLKQFKFVDRTFNLNVATSKAILEFFLARHQPGNFYHFEMIPDRLPPDLRAIIAQFPPGSLQFEVGIQTFNPAVGQNISRRQNYARLADNFNFLRRETGVHIHADLIAGLPGETLDSFAAGFDRLVALGPQEIQVGILKRLRGTPIVRHDAAWQMVYNTHPPYEILQNKLMDFALMQRLRRFAKYWDLIGNSGNFVATAPLIWSDAASPASPFHSFLRLSDWLYEQLRRTDSIALMRLMELLFAFLTQERKLDARGVAETFWRDCRRTGRRDAPNFLEAYLPAENWSAIRERDRSLPKRQSRHLAV*