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berkeley_reactor_200306_planktonic_scaffold_311853_50

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_58_30

near complete RP 49 / 55 BSCG 49 / 51 ASCG 14 / 38 MC: 1
Location: 60944..61861

Top 3 Functional Annotations

Value Algorithm Source
Transcriptional regulator, LysR family n=1 Tax=Cyanothece sp. (strain PCC 7425 / ATCC 29141) RepID=B8HL91_CYAP4 similarity UNIREF
DB: UNIREF100
  • Identity: 43.6
  • Coverage: 291.0
  • Bit_score: 247
  • Evalue 1.40e-62
Uncharacterized protein {ECO:0000313|EMBL:KGA02161.1}; TaxID=28258 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Halomonadaceae; Cobetia.;" source="Cobetia marina (Deleya marina).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 45.7
  • Coverage: 304.0
  • Bit_score: 260
  • Evalue 1.70e-66
LysR family transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 43.6
  • Coverage: 291.0
  • Bit_score: 247
  • Evalue 3.90e-63

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Taxonomy

Cobetia marina → Cobetia → Oceanospirillales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 918
ATGGAACTGCGCTATCTAAAATACTTTGTGACCGTGGCGGAACGACAGAGCTTCACCCGCGCGGCCGAGGAATTGCGTGTGGCGCAGCCGGCCATCAGCCAGCAAATCAAATCTTTGGAAGCGGAACTTGGCGTCTCGCTGCTGCACCGCAACAAGCGCAGCGTGAGGCTCACGGCCGCGGGTAACGCGTTTCTGTCTGAAGCGAAGGAGATTCTCGCCCATGCGGACCTTTCCAAGCAAGTGGCCCGCCGCGCCGCCCGCGGCGAAACCGGCTCGCTCGCCATTGGCTGTTTCAGCTCATCGGTGACCGGCTTCCTGCCGGAACTGATCAAGGCATATCGGAAAAAATTTCCCGCTGTGCGCGTGCATTTGTTTGAACTGACACCCGAACAGCAATTGCAGGCCTTTGCCCGCGGGAAAATTGACGTCGGTTTCACTCGTCCACTGGCCGCAGCGGACGAAAAGAATTTTGTGCAAGAACGGATTTACCGCGATCGCCTGATGCTCGCCGTGCCGGAAGCCCATCCGCTTGCCAAGGCGGGGCGGGTTCGGTTGGAGAAATTCGCTCGCGAAGATTTTGTAATGTTCAAACGCAGCGAAGCGCCCAAGCTGGTTGACGAGATGACCCAAATTTGTGCCAAGGCCGGTTTCACTCCGCAAGTCGTCAGCGAGCCGCCCATGATGCAAACCGTGTTGATGGCAGTCGCGGCCAGCATCGGCGTGGCGCTCGTGCCCGGATGTGTGCGCAGCTTCCGCCAGCCCGGCGTGGCGTTCCTGCCCGTGCGCCCGGTTTCTCACCCGATTGACCTCGTGCTCGCGCGACCCAAGGGCGAAATTTCCCCAACCGTTTCAGCTTGGTTGGAGTTGGCGAACGCGCATCTGCCAGCCATCCGCCAACAAATGGAAAAGGGCTTTTAA
PROTEIN sequence
Length: 306
MELRYLKYFVTVAERQSFTRAAEELRVAQPAISQQIKSLEAELGVSLLHRNKRSVRLTAAGNAFLSEAKEILAHADLSKQVARRAARGETGSLAIGCFSSSVTGFLPELIKAYRKKFPAVRVHLFELTPEQQLQAFARGKIDVGFTRPLAAADEKNFVQERIYRDRLMLAVPEAHPLAKAGRVRLEKFAREDFVMFKRSEAPKLVDEMTQICAKAGFTPQVVSEPPMMQTVLMAVAASIGVALVPGCVRSFRQPGVAFLPVRPVSHPIDLVLARPKGEISPTVSAWLELANAHLPAIRQQMEKGF*