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berkeley_reactor_200306_planktonic_scaffold_310897_18

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_58_30

near complete RP 49 / 55 BSCG 49 / 51 ASCG 14 / 38 MC: 1
Location: comp(30315..31007)

Top 3 Functional Annotations

Value Algorithm Source
50S ribosomal protein L1 n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XFP1_9BACT similarity UNIREF
DB: UNIREF100
  • Identity: 81.4
  • Coverage: 231.0
  • Bit_score: 376
  • Evalue 1.10e-101
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 81.4
  • Coverage: 231.0
  • Bit_score: 376
  • Evalue 1.60e-101
rplA; 50S ribosomal protein L1 similarity KEGG
DB: KEGG
  • Identity: 64.7
  • Coverage: 221.0
  • Bit_score: 299
  • Evalue 6.60e-79

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Taxonomy

Pedosphaera parvula → Pedosphaera → Verrucomicrobiales → Verrucomicrobiae → Verrucomicrobia → Bacteria

Sequences

DNA sequence
Length: 693
ATGCCCAGTAAACGTTACAAAAAAGCGCTCGAAGCGGTTGATGCCAAAAAAACGTATCCCTTGAAGGATGCGGTTGGCGTGCTCGCCAAATTCCCCAAGGCCAAATTTGACGAAACGATTGACCTTGCGTTCCGCCTGGGGGTGGATCCCAAGCAGTCGGACCAGATGGTTCGCGGAACGGTTCCCCTGCCGCACGGCAGCGGCAAGACGGTTCGCGTTTTGGTTTTTGCCAAAGGCGCGGCGGCGGATGCCGCCAAGGCGGCCGGCGCGGAAAATGTTGGATTCGAGGACATGATCGCCAAGTGCAACAGCGGTTGGACCGATTTTGATGTCGCGGTGGCCACGCCGGAGGCGATGGTGGAAGTTCGCAAGCTGGGCAAGGTCTTGGGACCGCGCGGCTTGATGCCGAACCCGAAGACCGGCACGGTGACGGAAGACACGGCGAAAGCGGTGAAGGAAGTCAAGGCCGGCCGGGTGGAATTCAAGGTTGACAAAGCGGGCAATGTCCACGTGATTGTGGGCAAGGCGTCATTCAAGCCCGAACAAATCGAGGACAACGCGCGCGCCGTGATTGATGCGGTTGCCAAGGCGCGTCCGACCAGCCTGAAAGGAAACTACATTCATTCCTGCACGCTTTCGGCGACGATGAGTCCGCCCGTCCGTGTGGATGTCCGTGAATTTTCAACCAACTAA
PROTEIN sequence
Length: 231
MPSKRYKKALEAVDAKKTYPLKDAVGVLAKFPKAKFDETIDLAFRLGVDPKQSDQMVRGTVPLPHGSGKTVRVLVFAKGAAADAAKAAGAENVGFEDMIAKCNSGWTDFDVAVATPEAMVEVRKLGKVLGPRGLMPNPKTGTVTEDTAKAVKEVKAGRVEFKVDKAGNVHVIVGKASFKPEQIEDNARAVIDAVAKARPTSLKGNYIHSCTLSATMSPPVRVDVREFSTN*