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berkeley_reactor_200306_planktonic_scaffold_310897

Search features with annotation key words

Displaying items 1-30 of 116 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_310897_1
unknown

Not on your lists

506..1234
DNA (729bp) protein (243aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_310897_2
unknown

Not on your lists

comp(1387..1500)
DNA (114bp) protein (38aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_310897_3
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists


comp(1867..3591)
DNA (1725bp) protein (575aa)
Proline--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01569, ECO:0000256|SAAS:SAAS00011671}; EC=6.1.1.15 {ECO:0000256|HAMAP-Rule:MF_01569, ECO:0000256|SAAS:SAAS00089874};; Prolyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_01569}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
prolyl-tRNA synthetase (EC:6.1.1.15)
Proline--tRNA ligase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XN55_9BACT
berkeley_reactor_200306_planktonic_scaffold_310897_4
GWC2_Ignavibacteria_rel_36_12_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(3648..5123)
DNA (1476bp) protein (492aa)
Glycoside hydrolase, family 28 n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01ZG3_SOLUE
glycoside hydrolase family protein
Tax=GWC2_Ignavibacteria_rel_36_12_curated
berkeley_reactor_200306_planktonic_scaffold_310897_5
RBG_13_Bacteroidetes_43_22_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(5134..6240)
DNA (1107bp) protein (369aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 89 RepID=UPI000379F14F
PKD domain-containing protein
Tax=RBG_13_Bacteroidetes_43_22_curated
berkeley_reactor_200306_planktonic_scaffold_310897_6
R_Omnitrophica_50_24, Omnitrophica, Bacteria

Not on your lists

6613..7698
DNA (1086bp) protein (362aa)
DHH domain-containing protein; K06881 phosphoesterase RecJ domain-containing protein id=12557299 bin=CNBR_ACIDO species=Corallococcus coralloides genus=Corallococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
phosphoesterase RecJ domain-containing protein
Tax=RIFCSPLOWO2_01_FULL_Omnitrophica_50_24_curated
berkeley_reactor_200306_planktonic_scaffold_310897_7
R_Dadabacteria_53_21, Dadabacteria, Bacteria

Not on your lists

7695..8960
DNA (1266bp) protein (422aa)
Hypothetical membrane protein n=1 Tax=Syntrophus aciditrophicus (strain SB) RepID=Q2LUE4_SYNAS
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
berkeley_reactor_200306_planktonic_scaffold_310897_8
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

9172..11610
DNA (2439bp) protein (813aa)
Glycoside hydrolase family 57 n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XNC4_9BACT
Glycoside hydrolase family 57 {ECO:0000313|EMBL:EEF58677.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
glycoside hydrolase protein
berkeley_reactor_200306_planktonic_scaffold_310897_9
Frankia symbiont of Datisca glomerata, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11607..14099
DNA (2493bp) protein (831aa)
malto-oligosyltrehalose synthase (EC:5.4.99.15)
Malto-oligosyltrehalose synthase {ECO:0000313|EMBL:AEH09935.1}; EC=5.4.99.15 {ECO:0000313|EMBL:AEH09935.1};; TaxID=656024 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia symbiont subsp. Datisca glomerata.;"
Malto-oligosyltrehalose synthase n=1 Tax=Frankia symbiont subsp. Datisca glomerata RepID=F8B327_FRADG
berkeley_reactor_200306_planktonic_scaffold_310897_10
Blastopirellula marina, Blastopirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(14162..14944)
DNA (783bp) protein (261aa)
hypothetical protein n=1 Tax=Geopsychrobacter electrodiphilus RepID=UPI00037CCC35
Probable glucose 1-dehydrogenase {ECO:0000313|EMBL:EAQ78503.1}; TaxID=314230 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Blastopirellula.;" source="Blastopirellula marina DSM 3645.;"
glucose dehydrogenase
berkeley_reactor_200306_planktonic_scaffold_310897_11
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

15137..16951
DNA (1815bp) protein (605aa)
Glycoside hydrolase 15-related n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XCR8_9BACT
Glycoside hydrolase 15-related {ECO:0000313|EMBL:EEF62264.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
glycosyl hydrolase, glycosyl hydrolase family 15
berkeley_reactor_200306_planktonic_scaffold_310897_12
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

17095..18861
DNA (1767bp) protein (589aa)
treZ_[H]; Malto-oligosyltrehalose trehalohydrolase (EC:3.2.1.141)
Malto-oligosyltrehalose trehalohydrolase id=4667526 bin=GWF2_Methylomirabilis_70_14 species=Thioalkalivibrio nitratireducens genus=Thioalkalivibrio taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=GWA2_Rokubacteria_70_23_curated
berkeley_reactor_200306_planktonic_scaffold_310897_13
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

18961..20817
DNA (1857bp) protein (619aa)
4-alpha-glucanotransferase (EC:2.4.1.25)
4-alpha-glucanotransferase id=4884125 bin=GWC2_Methylomirabilis_70_24 species=Modestobacter marinus genus=Modestobacter taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Tax=GWA2_Rokubacteria_70_23_curated
berkeley_reactor_200306_planktonic_scaffold_310897_14
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(20934..25079)
DNA (4146bp) protein (1382aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
DNA-directed RNA polymerase subunit beta' n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XFN7_9BACT
rpoC; DNA-directed RNA polymerase subunit beta'
berkeley_reactor_200306_planktonic_scaffold_310897_15
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(25102..29016)
DNA (3915bp) protein (1305aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
DNA-directed RNA polymerase subunit beta n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XFN8_9BACT
rpoB; DNA-directed RNA polymerase subunit beta
berkeley_reactor_200306_planktonic_scaffold_310897_16
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists


comp(29220..29606)
DNA (387bp) protein (129aa)
50S ribosomal protein L7/L12 n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XFN9_9BACT
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
rplL; 50S ribosomal protein L7/L12
berkeley_reactor_200306_planktonic_scaffold_310897_17
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists


comp(29789..30301)
DNA (513bp) protein (171aa)
50S ribosomal protein L10 n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XFP0_9BACT
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00362}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
50S ribosomal protein L10
berkeley_reactor_200306_planktonic_scaffold_310897_18
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists


comp(30315..31007)
DNA (693bp) protein (231aa)
50S ribosomal protein L1 n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XFP1_9BACT
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
rplA; 50S ribosomal protein L1
berkeley_reactor_200306_planktonic_scaffold_310897_19
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists


comp(31062..31487)
DNA (426bp) protein (142aa)
50S ribosomal protein L11 n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XFP2_9BACT
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736, ECO:0000256|SAAS:SAAS00021680}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
rplK; 50S ribosomal protein L11
berkeley_reactor_200306_planktonic_scaffold_310897_20
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(31590..32135)
DNA (546bp) protein (182aa)
Transcription termination/antitermination protein NusG n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XFP3_9BACT
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
nusG; transcription antiterminator NusG
berkeley_reactor_200306_planktonic_scaffold_310897_21
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(32144..32395)
DNA (252bp) protein (84aa)
Protein translocase subunit SecE n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XFP4_9BACT
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
secE; Preprotein translocase subunit SecE
berkeley_reactor_200306_planktonic_scaffold_310897_trna_3
unknown

Not on your lists

comp(32491..32577)
DNA (87bp)
transferRNA Ser
berkeley_reactor_200306_planktonic_scaffold_310897_trna_2
unknown

Not on your lists

comp(32593..32665)
DNA (73bp)
transferRNA Trp
berkeley_reactor_200306_planktonic_scaffold_310897_22
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(32746..33933)
DNA (1188bp) protein (396aa)
Elongation factor Tu n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XFP5_9BACT
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
elongation factor Tu
berkeley_reactor_200306_planktonic_scaffold_310897_trna_1
unknown

Not on your lists

comp(33985..34057)
DNA (73bp)
transferRNA Thr
berkeley_reactor_200306_planktonic_scaffold_310897_23
GWF2_Verrucomicrobia_62_7_curated, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(34265..35077)
DNA (813bp) protein (271aa)
NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Opitutaceae bacterium TAV5 RepID=H1ILE8_9BACT
hydrogenase
Tax=GWF2_Verrucomicrobia_62_7_curated
berkeley_reactor_200306_planktonic_scaffold_310897_24
RLO_Verrucomicrobia_64_8, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(35105..36586)
DNA (1482bp) protein (494aa)
NADH-ubiquinone oxidoreductase chain 49kDa n=1 Tax=Opitutaceae bacterium TAV5 RepID=H1ILE6_9BACT
hydrogenase
Tax=RIFCSPLOWO2_12_FULL_Verrucomicrobia_64_8_curated
berkeley_reactor_200306_planktonic_scaffold_310897_25
RLO_Verrucomicrobia_64_8, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(36583..38025)
DNA (1443bp) protein (481aa)
NADH dehydrogenase (quinone) (EC:1.6.99.5)
NADH dehydrogenase (Quinone) n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZSE2_OPITP
Tax=RIFCSPLOWO2_12_FULL_Verrucomicrobia_64_8_curated
berkeley_reactor_200306_planktonic_scaffold_310897_26
Desulfomicrobium baculatum, Desulfomicrobium, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(38022..38750)
DNA (729bp) protein (243aa)
NAD-dependent dehydrogenase subunit n=1 Tax=Desulfomicrobium baculatum (strain DSM 4028 / VKM B-1378) RepID=C7LSU7_DESBD
NAD-dependent dehydrogenase subunit
NAD-dependent dehydrogenase subunit {ECO:0000313|EMBL:ACU90697.1}; Flags: Precursor;; TaxID=525897 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfomicrobiaceae; Desulfomicrobium.;" source="Desulfomicrobium baculatum (strain DSM 4028 / VKM B-1378); (Desulfovibrio baculatus).;"
berkeley_reactor_200306_planktonic_scaffold_310897_27
GWF2_Verrucomicrobia_62_7_curated, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(38735..39637)
DNA (903bp) protein (301aa)
Formate hydrogenlyase subunit 4 n=1 Tax=Opitutaceae bacterium TAV1 RepID=I6AQ05_9BACT
NADH dehydrogenase subunit 1
Tax=GWF2_Verrucomicrobia_62_7_curated
Displaying items 1-30 of 116 in total

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