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berkeley_reactor_200306_planktonic_scaffold_310897_14

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_58_30

near complete RP 49 / 55 BSCG 49 / 51 ASCG 14 / 38 MC: 1
Location: comp(20934..25079)

Top 3 Functional Annotations

Value Algorithm Source
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 83.9
  • Coverage: 1308.0
  • Bit_score: 2239
  • Evalue 0.0
DNA-directed RNA polymerase subunit beta' n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XFN7_9BACT similarity UNIREF
DB: UNIREF100
  • Identity: 83.9
  • Coverage: 1308.0
  • Bit_score: 2239
  • Evalue 0.0
rpoC; DNA-directed RNA polymerase subunit beta' similarity KEGG
DB: KEGG
  • Identity: 70.3
  • Coverage: 1369.0
  • Bit_score: 1958
  • Evalue 0.0

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Taxonomy

Pedosphaera parvula → Pedosphaera → Verrucomicrobiales → Verrucomicrobiae → Verrucomicrobia → Bacteria

Sequences

DNA sequence
Length: 4146
ATGACCAGTTCCAAAGAAAACGCCCGTGAATTGCTCGGTCTCGACAAGGTCAACCAGGTTGACTACGTCGGCATCACGCTCGCGTCGCCCGACGCCATCCGCTCCTGGAGCAAGGGCGAAGTCAAGAATCCCGAAACGATCAACTACCGCACGTTCAAACCGGAAAAGGGCGGCCTCTTCTGCGAACGTATTTTCGGTCCCGTCAAGGACTGGGAATGTTCCTGCGGCAAATACAAGCGCATCAAACATCGCGGCATCGTCTGCGACCGTTGCGGTGTCGAAGTGACCTTGTCCCGCGTTCGCCGTGAACGCATGGGCCACATCGAGCTCGCCGTGCCGGTGCAGCACATCTGGTTCTTCAAGTGCATGCCGTCGCGCGTCGGTCTGGCGCTCGACATGACGGCGCGCCATTTGGAACGCGTGATTTATTACGAGGATTATCTCGTGATTGATCCGGGCACCACGCCGCTCAAGCAAAATCAGTTGCTGACGGAAGTCGAACTCCGCGAAGCCCGCGAAACCTACGGCGCCGAGGCGTTTGTGGCCAAGATGGGCGCGGAAGCCGTGCGTGAAGCGCTGGCCCGGGTGGACCTCACCAAGCAGGCGGACGAATTGTCCATCGCGATGACCGAAACCAAGAGCAAGCAGATTCGCAAGAAGCTCGCGAAGCGCATCAAATTGCTCCAGGGGTTGGCGTCGTCCAAGAGCCGTCCCGAATGGATGGTGCTCACGGTGCTGCCGGTGATTCCGCCGGACTTGCGTCCGCTGGTCCCGCTCGAAGGCGGTCGTTTCGCGACGTCCGACTTGAACGATCTTTATCGCCGCGTCATCAACCGCAACAACCGTCTCCGCACGTTGCTGCAATTGAAGACGCCGGAAGTCATCATCCGCAACGAGAAGCGCATGTTGCAGGAAGCCGTGGACGCGTTGTTTGACAACGGCCGTCACGGGCGTCCGGTGACCGGCGCGGGCAACCGCTCGTTGAAATCCCTGAGCGACATGCTCAAGGGCAAGGGCGGTCGTTTCCGTCAAAACTTGCTCGGTAAACGCGTGGATTACTCCGGCCGTTCCGTCATCGTGATCGGCCCGGAACTCAAGCTGAACCAGTGCGGTCTGCCCAAGAAAATGGCGCTCGTGTTGTTCGAGCCGTTCATCATCCGGCGCCTGAAAGAACTCGGCTACGTTCACACCGTTCGTAGCGCGAAGAAAATGATCGAGCGCCAGACGAAGGAAGTGTGGGACGTTTTGGAAGAAGTGACCAAGGGCCATCCGGTTCTCCTAAACCGCGCCCCGACGTTGCACCGTTTGTCCGTGCAGGCGTTTGAACCGCAGTTGATCGAAGGCGAGGCGATCCGCATTCATCCGCTGGTCTGCACCGCTTACAACGCCGACTTCGACGGTGATCAGATGGCCGTTCACGTGCCGTTGTCCGTGGAAGCGCAGATGGAGGCCCGCATGTTGATGATGGCGACGAACAACATCTTCTCGCCTTCGTCCGGCAAACCGATCATCACGCCGACGCAGGACATTACGCTGGGTTCCTATTACGTCACCGCCGAGCCGCGCAAGCCCATGCCGGCGAATGTGAGCGAACTGCCGTTGTTCGGCTCGAAGGAAGAGGTCATTTTCGCCTACAGCGATCTGAGCCTGAAAACCCACGACCGCATCCGCCTCGCGAATCCGGACTTCGGCAGACAAACCGTCTTTGGCAACAAGGACAAGAAGGTCATTGAAACCACGGTCGGCCGCGTGTTGTTCAGCGAAATCTGGCCCGAAGAACTCGGGTTCCACAACAAGCCGGTGAAGAAATCCGACATCGGCGACCTGATCTGGAAGTGTTACAAGCACGCCGGTCACGACAAGACCGTGGTCATGCTGGACAAGCTCAAGGAAATCGGTTTCCGCGAAGCCACCAAATCCGGCGTGTCCATCGGCATTGACGACATGATCGTGCCGAAGGAGCGCAACGAGCAGATTGAAAACGCCCACAAGCAGATCAAGGAAGTGGAGAAGCAATATCGCAAGGGCGTCATCACCTCCGGCGAGCGTTACAACAAGATCGTGGACATCTGGACGCATTGCACGGATCAGATTTCCGGCGTGATGTTCAAGACGCTGGAGCTGAACCAGGGCAAGAACGAATATAACCCCGTTTACCTGATGGTGGATTCCGGCGCCCGCGGCAACAAGCAGCAGGTGCGTCAGCTCGCCGGTTTGCGCGGCCTGATGGCCAAGCCCAGCGGCGAAATCATCGAGAAGCCGATTTTGGCGAACTTCCGCGAAGGTTTGTCCGTGCTGGAATACTTCATCTCCACGCACGGCGCCCGCAAGGGTCTGGCCGACACGGCGCTCAAGACGGCCGACTCCGGTTACATGACGCGCAAACTGGTGGATGTTTCCCAGGACGTGATCATTCAGGAACACGACTGCGGCACCACCAATGGCATCTGGGTTTCCGCCGTTTTCGAGGGCGAAGACGAGGTGGTGAAGATCTCCGACCGGCTCGTGGGCCGTTTCTCCTGTGACGACATCGTGAATCCGATCAGTCCGAAGGAATTCCTGGTGCGCGCGAACGAGGAAATTGACGAGACCAAGGCCAGGGCGATTGACGCCGCCGGCATTGACCGCGTTCGCATTCGTTCCGTGCTCACCTGCGAAAGCAAACATGGCATTTGCCAGAACTGCTACGGTCGCAACTTGGCGACCGGGCTTCAGGTCAAGCTCGGTGAAGCGGTGGGCATCATCGCCGCGCAGTCCATCGGCGAACCCGGCACGCAGCTCACGATGCGCACGTTCCATACGGGCGGTGTCGCCGCCGGTGTGTTCAAGCAGCCGCAGATCAAGGCCAAGCACGACGGTATCATCAAATACAACGACCTGCGTTCCGTGGAGCTGGAGGACGGCAACAACATCGTCCTGAACAAGAACGGTTCCATCCAGATTCTTGCCGACGACGGCCGCGAACTGGAAAACCACATCATCGTCATCGGCGCGGTCGTTTCCGTCAAGGATGGCGAGAAGGTGAAGAAGGGTGAAACCTTTGTTCAATGGGATCCGCATAACGTGCCGATTCTCTCCGAAAAGGCGGGCAAGGTGCGTTTCCACGACATCATCGAAGGGGTCACGATGAAGCAGGAAGTGGACGAAGCCACCGGCGAAGAATCCATGGTCGTCATTGACCACAAGGAGGATTTGCACCCGCAGATCATCATGCACGACGAACACGGCGAAGTCGTGGCGAACTACCCGATTCCTTCCGGCGCCCACATCGTCGTGAACGAAGGCGACAAAATCTGGCCTGGCACGCTGCTCGCCAAGACGCCGCGTAAACAGGCCAAAACCCGTGACATCACGGGCGGTCTGCCCCGCGTGGCCGAATTGTTCGAGGCCCGCCGTCCGAAAGACGCGTCGGAAATCTCCAAGATTGACGGCATCGTGGATTTCGGGCCGAGCGTGCGCGGCAAACGTTGCATTCTCATCAAGGATCCGCAAACCAATCTGGAAGAGGAACACCTCATTCCGATCGGCAAGCACGTCATCGTCTTCAAGGGCGACCTGGTCAAGAAAGGCCAGCAGCTCACCGAAGGCCCGATGGATCCGCACGAGATTCTCGAAGTCTGCGGACCGCAGGAATTGCAGGAACATCTCGTCGGCGAAGTCCAGGAAGTTTATCGTCTCCAAGGTGTGACGATCAACGACAAGCACATCGAAATCATCGTTCGCCAGATGCTCCGCAAGGTGCGCATCACCGAACCCGGCGACACGCAGTTCCTCTGGGGCGAACAGGTGGACAAACTGGAATTCGAGGCCGAGAACGAAACGGTCGAGAAAAAGGGCGGCAAGCCCGCCGAAGCCACGCCGGTGCTGCTCGGCATCACCAAGGCTTCACTCGAGACCGACAGCTTCCTGAGCGCGGCGTCCTTCCAGGACACCACCCGCGTGCTCACCGAAGCCGCCACGCGTTCCAAGATTGACAGCCTCCGCGGCTTCAAGGAAAACGTCATCATGGGGCACATCATCCCGGCGGGAACCGGTTTTGACCGTCACCGCAAGGTGGACCTCAAGCCGCTCGTTGAAGTGCCCGACGAACCGGAAGTCGAAGAACCGGCCGAGCCGATGGAATCCGAAAATCCGTTGCTGGCCTGA
PROTEIN sequence
Length: 1382
MTSSKENARELLGLDKVNQVDYVGITLASPDAIRSWSKGEVKNPETINYRTFKPEKGGLFCERIFGPVKDWECSCGKYKRIKHRGIVCDRCGVEVTLSRVRRERMGHIELAVPVQHIWFFKCMPSRVGLALDMTARHLERVIYYEDYLVIDPGTTPLKQNQLLTEVELREARETYGAEAFVAKMGAEAVREALARVDLTKQADELSIAMTETKSKQIRKKLAKRIKLLQGLASSKSRPEWMVLTVLPVIPPDLRPLVPLEGGRFATSDLNDLYRRVINRNNRLRTLLQLKTPEVIIRNEKRMLQEAVDALFDNGRHGRPVTGAGNRSLKSLSDMLKGKGGRFRQNLLGKRVDYSGRSVIVIGPELKLNQCGLPKKMALVLFEPFIIRRLKELGYVHTVRSAKKMIERQTKEVWDVLEEVTKGHPVLLNRAPTLHRLSVQAFEPQLIEGEAIRIHPLVCTAYNADFDGDQMAVHVPLSVEAQMEARMLMMATNNIFSPSSGKPIITPTQDITLGSYYVTAEPRKPMPANVSELPLFGSKEEVIFAYSDLSLKTHDRIRLANPDFGRQTVFGNKDKKVIETTVGRVLFSEIWPEELGFHNKPVKKSDIGDLIWKCYKHAGHDKTVVMLDKLKEIGFREATKSGVSIGIDDMIVPKERNEQIENAHKQIKEVEKQYRKGVITSGERYNKIVDIWTHCTDQISGVMFKTLELNQGKNEYNPVYLMVDSGARGNKQQVRQLAGLRGLMAKPSGEIIEKPILANFREGLSVLEYFISTHGARKGLADTALKTADSGYMTRKLVDVSQDVIIQEHDCGTTNGIWVSAVFEGEDEVVKISDRLVGRFSCDDIVNPISPKEFLVRANEEIDETKARAIDAAGIDRVRIRSVLTCESKHGICQNCYGRNLATGLQVKLGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAAGVFKQPQIKAKHDGIIKYNDLRSVELEDGNNIVLNKNGSIQILADDGRELENHIIVIGAVVSVKDGEKVKKGETFVQWDPHNVPILSEKAGKVRFHDIIEGVTMKQEVDEATGEESMVVIDHKEDLHPQIIMHDEHGEVVANYPIPSGAHIVVNEGDKIWPGTLLAKTPRKQAKTRDITGGLPRVAELFEARRPKDASEISKIDGIVDFGPSVRGKRCILIKDPQTNLEEEHLIPIGKHVIVFKGDLVKKGQQLTEGPMDPHEILEVCGPQELQEHLVGEVQEVYRLQGVTINDKHIEIIVRQMLRKVRITEPGDTQFLWGEQVDKLEFEAENETVEKKGGKPAEATPVLLGITKASLETDSFLSAASFQDTTRVLTEAATRSKIDSLRGFKENVIMGHIIPAGTGFDRHRKVDLKPLVEVPDEPEVEEPAEPMESENPLLA*