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berkeley_reactor_200306_planktonic_scaffold_310897_15

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_58_30

near complete RP 49 / 55 BSCG 49 / 51 ASCG 14 / 38 MC: 1
Location: comp(25102..29016)

Top 3 Functional Annotations

Value Algorithm Source
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 86.0
  • Coverage: 1282.0
  • Bit_score: 2201
  • Evalue 0.0
DNA-directed RNA polymerase subunit beta n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XFN8_9BACT similarity UNIREF
DB: UNIREF100
  • Identity: 86.0
  • Coverage: 1282.0
  • Bit_score: 2201
  • Evalue 0.0
rpoB; DNA-directed RNA polymerase subunit beta similarity KEGG
DB: KEGG
  • Identity: 69.9
  • Coverage: 1276.0
  • Bit_score: 1788
  • Evalue 0.0

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Taxonomy

Pedosphaera parvula → Pedosphaera → Verrucomicrobiales → Verrucomicrobiae → Verrucomicrobia → Bacteria

Sequences

DNA sequence
Length: 3915
ATGCCATCGCGAGCCACAGAACGTATCAACTTCGGCAAAATCAAGGAAGTCGTTGCCCCCCCGAACATGATCGAGCTGCAGACGAATTCCTATGCGGAATTTTTGCAGGCCGACGTGACGCCGTCCAAGCGTCAAAAGCACGTGGGGCTGGAAGCGGTTTTCCGTGAAGTGTTTCCCATTGAGAGCTACGACGGCAAGGTCGTGCTGGATTATGATTCCTACGAAATCGGCGAACCCAAGATTGACTGGCTTGAATGTCTGCGGGAGGGCCTGACCTATGGCGCGCCGCTTTACGTGACGTTTCTCCTCAAGGAGGAGGAAAAGGGCGCCAAGGAAGAAAAAGTTTTCATGGGGGAACTGCCCCTGATGACGCCGCAAGGCACCTTTGTCATCAATGGTGCCGAACGCGTCGTGGTGTCGCAGTTGCACCGTTCTCCGGGCATCGCCTTTGAAGCCACCCAGCACCCGAACGGCAAGATGTTGCACAGTTTCCGCGTGATTCCCGACCGCGGCTCGTGGTATGAGGCGCAATTCGACACCAGCGATTTGCTTTACGTTTATCTCGACCGTAAAAAGCGCCGGCGCAAATTTTTGACGACCACTTTTTTCCGCGCACTTTCCTTCCTTGATCATGAGGAAAAGGAAAAAGGCGGCAAGTCCAAGGACAACGGCGGCCTGACGCGCGGCACCGACGAGGAAATTTTGAAGCTGTTCTACTCCATCGAGGAAATCTCGGTGAAGGAAGCGGAAAAGATTGAAGATTTGCAAAATCGCGTGCTCGTGCAGGACGCGGTGGATGAGGAAAAGGGCCTCGTCGTGGCGCGCGCGTTCGAGCCGCTGTCCAAGGCGGTTGTCAAGCAGATCGCCGAACTGGGCATCACCAAGATCAAGGTCGTGGATACCTCGGTGGACGAGGGGAACATGATCAAGTGCCTCAAAAAAGATCCGGCCAAGAACGAGGAAGAGGCGCTCAAGGACATTTACCGTCGCCTGCGTCCCGGCGATCCGCCGACGGCCGCTAACTCGCGTGCGTTGATCAAGCGTTTGTTCTTTGACGAAAAACGCTATGACCTCGGCCGCGTGGGCCGTTACAAAATCAACCAGAAGCTGGGCTTGAAGAACAACAGCCGCATCCTGACCAAGGACGATCTGGTTGAAGCCACCAAGTATCTGCTCAAGCTCAAAAAGGGCGAAGGCTCTTTGGATGACATTGATCATCTGGGCAGCCGCCGCATCCGCACGGTGGGTGAATTGCTCTGCAACCAATGCCGCGTGGGCCTGTCCCGCACGGAACGCCTGGTGAAGGAGCGCATGACGCTGTTCGATCAAACGGTCGAGCAGATGACGCCCCAAAAGCTGATCAACCCGAAGGCGCTTTCGGCGGTGATCCGCGACTTCTTTGGCCGCAGCCAGTTGTCGCAGTTCATGGACCAGATCAATCCGCTGGCTGAGCTGACCCACAAACGCCGCTTGTCGGCTCTCGGACCGGGCGGTCTTTCCCGCGACCGCGCGGGCTTTGAAGTCCGCGACGTGCATCCGTCGCATTACGGCCGCATTTGTCCAATTGAAACGCCGGAAGGTCCGAACATCGGCCTGATCGCGTCGCTCGCGACGTTTGCGCGCATCAATGAATTCGGCTTCCTGGAAACGCCCTACCGCAAGGTGAAGGACGGCCGGGTGTCCAACGAAATTGAATACCTGACCGCCGACCGTGAGGAACAATTCATCGTGGCGCAGGCCAACTCCCAGATGGATGAGAAGGGACATTTCACCGAAGAACGCGTGGTCTGCCGTCAGCGCGGCGAATTCATTGACGTGGAGCGCAATAAGGTGGATTTCATGGACGTTTCGCCGAAGCAGCTCGTTTCGATTGCGGCCTCGTTGATTCCGTTCCTCGAACACGACGACGCGAACCGCGCGTTGATGGGGTCCAACATGCAACGCCAGGCGGTGCCGCTGCTCGTCACCGAAGCGCCGTTTGTCGCCACCGGTCTGGAAGACCGCGTGGCCCGCGATTCGCGTGCTGTTCTGGTCGCGGAAGAAGCCGGCAAAGTGGCTTCCGTCAACGGCAACCAAATCATCATCACCGAAAACGGCCATTTGCCCGAAGGCAAGAAAAAGATCAAACACGATCCCGCCAACGGCGTCTGGATTTATCCGGTGCGCAAATTCATGCGTTCCAATGCGGCCACCTGCATCAACCAGAAAATTCTGGTGCAGAAAGGCGACCACATAAAAAAAGGCCAGGTGCTCGCCGACGGTCCCTGCACGCAGGGCGGCGAACTGGCGCTCGGCCGCAACGTGCTCGTCGCGTTCATGCCGTGGAACGGTTACAACTTCGAGGACGCCATTCTCATCAGCGAGAAGATCGTCAAGGAAGACATCTTCACCTCGATTCACATTGATGAATTTGAAGTGGCGGCCCGCGACACCAAGCTTGGACCGGAGGAAATCACGCGCGACATTCCGAATCTCGGCGATGAAGCGTTGAAGAATCTCGGACCGGACGGCGTTATCCGCATCGGCGCCGAAGTGAAGCCCGGCGACATTCTCGTCGGCAAAATCACGCCGAAGTCCGAAACCGAACTCGCGCCGGAAGAGCGTTTGCTCCGCGCCATCTTCGGTGAAAAAGCCGCTGACGTGAAGGATACGTCATTGAAGGTTCCGTCCGGCACCTACGGCATCGTCATGGACGTCAAGGTTTCGGCCAAGAAGGATGCCGACCGCGTCACTCGTTCGGTTTCCAGCGAGGAGAAGCGCCACGCGAAGCAGATCGAGGACGAACACAAGAAGAAGACCAACGAACTGGAAGACCAGTTGACGGAAGCGTTGAGTAACATTTTGCTTGGCGAAAAAATCCCGCTCGACGTGGTCAACAGCGAAACCGGCGAAATCATCATTCCGGCGAACCGCAAAATCACCAAGACGTTGTTGCGCAAGCTCGCGACGGTCTATGACCGCATTGAAATTGATCCGTCGCCGATCCGCAACAAGATCAACGAAATCATCGGCCAGTTTAAGAAGAAGTTCGATGATTTGCAGATGCAATACGACGAGGAAATGGAGCGCGCCGAGGCGGGCGAAGGCGTGGAAGCCGGCATCGTCAAGTCGGTGAAGGTTTACATTGCCTCCAAACGCAAGCTGTCGGTCGGTGACAAGATGGCCGGTCGTCACGGTAACAAGGGCGTGGTGGCCCGCATCGTGAAAGAAGAAGACATGCCGTTCGTCGCGGACGGAACGCCGGTGGAAATCGTTTTGAATCCGCTGGGTGTGCCGAGCCGTATGAACGTCGGCCAGGTCTTGGAAACGCACCTCGGTTGGGCGGCGAAGCTGCTCGGCTTGAAGTTTGCCACGCCGGTGTTTGACGGCATCAAGGAAAAGGACATCCGCGGCTACCTCAAGCAGGCCGGGTTGCCCGAACATGCCAAGACGCATCTTTACGACGGCCGCACCGGCGAACGGTTCGACCAGGAGATTGTCGTGGGCTACATCTACATGCTGAAGCTCGGTCACTTGGTGGCGGACAAGATTCACGCCCGCGCCGTCGGTCCGTATTCGCTCGTCACCCAGCAGCCGCTGGGCGGCAAGGCGCAATACGGCGGCCAGCGCTTCGGCGAAATGGAAGTGTGGGCGATGGAAGCCTACGGCGCGGCTTACACGTTGCAGGAACTCCTGACCGTGAAATCCGACGACGTCCAGGGCCGCACCCGCATTTACGAAAGCATCGTCAAGGGCGACAACGCGCTCGAAGCGGGGATTCCCGAATCGTTCAACGTGCTCGTCAAGGAAATGCAATCGCTGGGTCTCGACGTGAAGGTGGGTTACACCAACCCGATCGAACACACCAATGGCGAGGCGGCTGCCGCCGCGACGTTCGCCTCCCTGACGGCGGCGACAACGGAATCCACCAACTGA
PROTEIN sequence
Length: 1305
MPSRATERINFGKIKEVVAPPNMIELQTNSYAEFLQADVTPSKRQKHVGLEAVFREVFPIESYDGKVVLDYDSYEIGEPKIDWLECLREGLTYGAPLYVTFLLKEEEKGAKEEKVFMGELPLMTPQGTFVINGAERVVVSQLHRSPGIAFEATQHPNGKMLHSFRVIPDRGSWYEAQFDTSDLLYVYLDRKKRRRKFLTTTFFRALSFLDHEEKEKGGKSKDNGGLTRGTDEEILKLFYSIEEISVKEAEKIEDLQNRVLVQDAVDEEKGLVVARAFEPLSKAVVKQIAELGITKIKVVDTSVDEGNMIKCLKKDPAKNEEEALKDIYRRLRPGDPPTAANSRALIKRLFFDEKRYDLGRVGRYKINQKLGLKNNSRILTKDDLVEATKYLLKLKKGEGSLDDIDHLGSRRIRTVGELLCNQCRVGLSRTERLVKERMTLFDQTVEQMTPQKLINPKALSAVIRDFFGRSQLSQFMDQINPLAELTHKRRLSALGPGGLSRDRAGFEVRDVHPSHYGRICPIETPEGPNIGLIASLATFARINEFGFLETPYRKVKDGRVSNEIEYLTADREEQFIVAQANSQMDEKGHFTEERVVCRQRGEFIDVERNKVDFMDVSPKQLVSIAASLIPFLEHDDANRALMGSNMQRQAVPLLVTEAPFVATGLEDRVARDSRAVLVAEEAGKVASVNGNQIIITENGHLPEGKKKIKHDPANGVWIYPVRKFMRSNAATCINQKILVQKGDHIKKGQVLADGPCTQGGELALGRNVLVAFMPWNGYNFEDAILISEKIVKEDIFTSIHIDEFEVAARDTKLGPEEITRDIPNLGDEALKNLGPDGVIRIGAEVKPGDILVGKITPKSETELAPEERLLRAIFGEKAADVKDTSLKVPSGTYGIVMDVKVSAKKDADRVTRSVSSEEKRHAKQIEDEHKKKTNELEDQLTEALSNILLGEKIPLDVVNSETGEIIIPANRKITKTLLRKLATVYDRIEIDPSPIRNKINEIIGQFKKKFDDLQMQYDEEMERAEAGEGVEAGIVKSVKVYIASKRKLSVGDKMAGRHGNKGVVARIVKEEDMPFVADGTPVEIVLNPLGVPSRMNVGQVLETHLGWAAKLLGLKFATPVFDGIKEKDIRGYLKQAGLPEHAKTHLYDGRTGERFDQEIVVGYIYMLKLGHLVADKIHARAVGPYSLVTQQPLGGKAQYGGQRFGEMEVWAMEAYGAAYTLQELLTVKSDDVQGRTRIYESIVKGDNALEAGIPESFNVLVKEMQSLGLDVKVGYTNPIEHTNGEAAAAATFASLTAATTESTN*