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berkeley_reactor_200306_planktonic_scaffold_310897

Search features with annotation key words

Displaying items 31-60 of 116 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_310897_28
Opitutaceae bacterium TAV5, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(39637..41583)
DNA (1947bp) protein (649aa)
NADH dehydrogenase (Quinone) n=1 Tax=Opitutaceae bacterium TAV5 RepID=H1ILE2_9BACT
NADH dehydrogenase
NADH dehydrogenase {ECO:0000313|EMBL:AHF92058.1}; TaxID=794903 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV5.;"
berkeley_reactor_200306_planktonic_scaffold_310897_29
RLO_Verrucomicrobia_64_8, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(41657..43606)
DNA (1950bp) protein (650aa)
NADH dehydrogenase (quinone) (EC:1.6.99.5)
NADH dehydrogenase (Quinone) n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZSD9_OPITP
Tax=RIFCSPLOWO2_12_FULL_Verrucomicrobia_64_8_curated
berkeley_reactor_200306_planktonic_scaffold_310897_30
RLO_Verrucomicrobia_64_8, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(43603..44304)
DNA (702bp) protein (234aa)
Putative PTS IIA-like nitrogen-regulatory protein PtsN n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZSD8_OPITP
PTS transporter subunit IIA-like nitrogen-regulatory protein PtsN
Tax=RIFCSPLOWO2_12_FULL_Verrucomicrobia_64_8_curated
berkeley_reactor_200306_planktonic_scaffold_310897_31
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(44565..45533)
DNA (969bp) protein (323aa)
Tyrosine recombinase XerC n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XL74_9BACT
Tyrosine recombinase XerC {ECO:0000256|HAMAP-Rule:MF_01808}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
integrase
berkeley_reactor_200306_planktonic_scaffold_310897_32
RBG_13_Planctomycetes_60_9_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

comp(45673..46893)
DNA (1221bp) protein (407aa)
Sel1-like repeat id=3825284 bin=GWF2_Planctomycete_41_51 species=Nitrosospira multiformis genus=Nitrosospira taxon_order=Nitrosomonadales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF2_Planctomycete_41_51 organism_group=Planctomycetes organism_desc=a211
putative sel1-like repeat protein
Tax=RBG_13_Planctomycetes_60_9_curated
berkeley_reactor_200306_planktonic_scaffold_310897_33
unknown

Not on your lists

comp(46945..47784)
DNA (840bp) protein (280aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_310897_34
RBG_16_Deltaproteobacteria_71_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(48566..49801)
DNA (1236bp) protein (412aa)
CoA ligase n=1 Tax=Ectothiorhodospira sp. PHS-1 RepID=H1G398_9GAMM
hypothetical protein
Tax=RBG_16_Deltaproteobacteria_71_12_curated
berkeley_reactor_200306_planktonic_scaffold_310897_35
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(49862..50620)
DNA (759bp) protein (253aa)
Alpha/beta hydrolase fold protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XE18_9BACT
Alpha/beta hydrolase fold protein {ECO:0000313|EMBL:EEF61909.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
alpha/beta hydrolase
berkeley_reactor_200306_planktonic_scaffold_310897_36
RifOxyA12_full_Lentisphaerae_48_11_curated, Lentisphaerae, Bacteria

Not on your lists

50702..51565
DNA (864bp) protein (288aa)
id=3544318 bin=GWC2_Planctomycetes_45_44 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Planctomycetes_45_44 organism_group=Planctomycetes organism_desc=Novel; good
Tax=RifOxyA12_full_Lentisphaerae_48_11_curated
berkeley_reactor_200306_planktonic_scaffold_310897_37
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(51597..54392)
DNA (2796bp) protein (932aa)
DNA topoisomerase {ECO:0000256|RuleBase:RU000518, ECO:0000256|SAAS:SAAS00046608}; EC=5.99.1.2 {ECO:0000256|RuleBase:RU000518, ECO:0000256|SAAS:SAAS00046608};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
DNA topoisomerase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XL73_9BACT
DNA topoisomerase III
berkeley_reactor_200306_planktonic_scaffold_310897_38
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

54623..56725
DNA (2103bp) protein (701aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
UvrD/REP helicase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9X9R1_9BACT
rep; ATP-dependent DNA helicase Rep
berkeley_reactor_200306_planktonic_scaffold_310897_39
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(56759..57496)
DNA (738bp) protein (246aa)
Glycosyl transferase family 2 n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XL32_9BACT
Glycosyl transferase family 2 {ECO:0000313|EMBL:EEF59383.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_310897_40
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

57576..58802
DNA (1227bp) protein (409aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XS43_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF57339.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_310897_41
unknown

Not on your lists

58944..59333
DNA (390bp) protein (130aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_310897_42
unknown

Not on your lists

comp(59541..59708)
DNA (168bp) protein (56aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_310897_43
Caulobacter segnis, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(59967..62369)
DNA (2403bp) protein (801aa)
Alpha-glucosidase {ECO:0000313|EMBL:ADG09394.1}; EC=3.2.1.20 {ECO:0000313|EMBL:ADG09394.1};; Flags: Precursor;; TaxID=509190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC; 15250 / LMG 17158 / TK0059) (Mycoplana segnis).;"
alpha-glucosidase (EC:3.2.1.20)
hypothetical protein n=1 Tax=Caulobacter sp. JGI 0001010-J14 RepID=UPI00035E2E47
berkeley_reactor_200306_planktonic_scaffold_310897_44
RBG_13_Planctomycetes_62_9_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

comp(62449..65145)
DNA (2697bp) protein (899aa)
Beta-glucosidase (EC:3.2.1.21)
Beta-glucosidase n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZN48_OPITP
Tax=RBG_13_Planctomycetes_62_9_curated
berkeley_reactor_200306_planktonic_scaffold_310897_45
RBG_13_Planctomycetes_63_9_curated, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(65364..67535)
DNA (2172bp) protein (724aa)
Glycoside hydrolase, family 43 n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q022X3_SOLUE
glycoside hydrolase family protein
Tax=RBG_13_Planctomycetes_63_9_curated
berkeley_reactor_200306_planktonic_scaffold_310897_46
Bacteroides intestinalis CAG:564, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(67595..68452)
DNA (858bp) protein (286aa)
Uncharacterized protein n=1 Tax=Bacteroides intestinalis CAG:564 RepID=R5MD37_9BACE
Uncharacterized protein {ECO:0000313|EMBL:CCY87559.1}; TaxID=1263049 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides intestinalis CAG:564.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_310897_47
RBG_13_Planctomycetes_60_9_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

comp(68491..69735)
DNA (1245bp) protein (415aa)
Endo-1,4-beta-xylanase n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZPQ7_OPITP
1,4-beta-xylanase
Tax=RBG_13_Planctomycetes_60_9_curated
berkeley_reactor_200306_planktonic_scaffold_310897_48
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(69848..71821)
DNA (1974bp) protein (658aa)
hypothetical protein n=1 Tax=Caulobacter sp. JGI 0001013-O16 RepID=UPI0003622E9C
Alpha-L-arabinofuranosidase domain protein {ECO:0000313|EMBL:EHQ27930.1}; Flags: Precursor;; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
alpha-L-arabinofuranosidase
berkeley_reactor_200306_planktonic_scaffold_310897_49
RBG_13_Planctomycetes_62_9_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

comp(71898..72536)
DNA (639bp) protein (213aa)
Glycoside hydrolase family 5 n=1 Tax=Gloeocapsa sp. PCC 7428 RepID=K9XDW0_9CHRO
glycoside hydrolase family 5
Tax=RBG_13_Planctomycetes_62_9_curated
berkeley_reactor_200306_planktonic_scaffold_310897_50
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(72587..73720)
DNA (1134bp) protein (378aa)
Esterase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T4Z4_PALPW
esterase
Esterase {ECO:0000313|EMBL:ADQ79788.1}; Flags: Precursor;; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
berkeley_reactor_200306_planktonic_scaffold_310897_51
unknown

Not on your lists

comp(74166..74606)
DNA (441bp) protein (147aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_310897_52
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(74677..77673)
DNA (2997bp) protein (999aa)
Ig domain protein group 2 domain protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XB04_9BACT
Ig domain protein group 2 domain protein {ECO:0000313|EMBL:EEF63189.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_310897_53
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

78185..81415
DNA (3231bp) protein (1077aa)
diguanylate cyclase n=1 Tax=Verrucomicrobium spinosum RepID=UPI00017449FC
Histidine kinase {ECO:0000313|EMBL:EDY20576.1}; Flags: Precursor;; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
histidine kinase
berkeley_reactor_200306_planktonic_scaffold_310897_54
R_Ignavibacteria_55_14, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

81430..82083
DNA (654bp) protein (218aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI000379C3CB
two-component response regulator
Tax=RIFCSPLOWO2_02_FULL_Ignavibacteria_55_14_curated
berkeley_reactor_200306_planktonic_scaffold_310897_55
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(82334..83143)
DNA (810bp) protein (270aa)
hypothetical protein n=1 Tax=Verrucomicrobia bacterium SCGC AAA164-E04 RepID=UPI0003820FF0
Uncharacterized protein {ECO:0000313|EMBL:EEF60158.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
prepilin-type N-terminal cleavage/methylation domain-containing protein
berkeley_reactor_200306_planktonic_scaffold_310897_56
RIFOXYB12_FULL_Lentisphaerae_65_16_curated, Lentisphaerae, Bacteria

Not on your lists

comp(83711..86113)
DNA (2403bp) protein (801aa)
Uncharacterized protein n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZRF2_OPITP
hypothetical protein
Tax=RIFOXYB12_FULL_Lentisphaerae_65_16_curated
berkeley_reactor_200306_planktonic_scaffold_310897_57
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(86126..88081)
DNA (1956bp) protein (652aa)
Putative alpha-glucosidase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XJ50_9BACT
Putative alpha-glucosidase {ECO:0000313|EMBL:EEF60088.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
glycoside hydrolase
Displaying items 31-60 of 116 in total

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