ggKbase home page

berkeley_reactor_200306_planktonic_scaffold_310897_58

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_58_30

near complete RP 49 / 55 BSCG 49 / 51 ASCG 14 / 38 MC: 1
Location: comp(88210..90786)

Top 3 Functional Annotations

Value Algorithm Source
Glycoside hydrolase clan GH-D n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XJ49_9BACT similarity UNIREF
DB: UNIREF100
  • Identity: 71.9
  • Coverage: 837.0
  • Bit_score: 1258
  • Evalue 0.0
Glycoside hydrolase clan GH-D {ECO:0000313|EMBL:EEF60087.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 71.9
  • Coverage: 837.0
  • Bit_score: 1258
  • Evalue 0.0
glycoside hydrolase clan GH-D similarity KEGG
DB: KEGG
  • Identity: 51.8
  • Coverage: 697.0
  • Bit_score: 693
  • Evalue 7.60e-197

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Pedosphaera parvula → Pedosphaera → Verrucomicrobiales → Verrucomicrobiae → Verrucomicrobia → Bacteria

Sequences

DNA sequence
Length: 2577
ATGAAACACCAATTCATTCGCTGTTTAGGCCTTGCCGTTGCCACTTGCCTCGCCCCAACTTTGTGTGCGGAGACGGTTTCGCTTTCGTCGCTTGATCTCAGCCGGATGACTTCCGGCTGGAGCGTGCCTCAGGCGGGACACGAAATTGCCGGCGGCCCGTTGAGTATTCGCGGCGAAAAATTCACCGATGGCGTGGGCACGCACGCCACCAGCAAAATGCGGCTGAGTTTGAATGGCAATGCCCGGCGATTCACCGCCGAAGTCGGCGTGGACGACAGCGCCGGCCAGGAAGGCAGCGTTGAATTTGTGGTGGGCGGCGACGGGAAAATTCTCTGGCGCAGCGGCGTGCTCAAAGCCGGCGATCCGGCCAAGTCGCTCAATGTCAATCTCGCCGGCATCAAAACGCTGACCTTGCGCGTGACCGATGGCGGCGACGGTGAAAGCAATGATCACGCGGACTGGGCGAATGCGAAAATTGAAATGACAGCCGGCGCGCCTTTGCCGGTGGCGTTGCCGCCGAATGAAACATTCGCCGTCAAAACCCGGAGTTGGGCCGTGAATTTTGAAGTGGGCGATGACGGACGTTTGTATCAGCGTCCGATTGGCGCGGCGGATTCCCAAACGAAATTGCGGCGCGATGGCGAGTGCTACCCGCAGGCCGGCGACGGTTATGTTTGGGAACCCGCGCTGCAAGTGATCCATGCCGATGGCAACACGTCCACGGCTCTGGTTTATGACGGCCGGACACAAACCAGCGAATCGCCGGACATGGATTTAACGCAAATTGAACTGCACGATCCGGCGTATCCGTTCAAGGTGACGCTCAATTTTCGCACGCATCGCGACGAAGATGTCATCGAGCAATGGACGACAATTCAAAATCACGAGACCGGCGTGGTGACGCTGAAACGGCTGGCGTCCAGTTCGCTGTTGTTCACGACCAACGTTTACCTCACGCATTTCTTCGGCGACTGGGCCAGGGAAATGTTGCATCCGATCACCGAGCCCTTGACGCCCGGCACCAAAGTGCTGGATTCCAAACTGGGCGTGCGGGCGGATCAGTTTCAAAACCCCAATTTCATCCTGTCGTTGAATGGTCCGGCGACGGAAACCAGCGGCGACGTGCTGGCGGGTTCGCTCGCCTGGTCCGGCAGTTTTCAATTCGCTTTTGACGACAACGCGCAGGGCGTTCGCGCCTTGTGCGGCATCAATCCGTTCATGTCGGCGTATCACTTGAAGCCGGATGGAACCTTCACCACGCCGAAGATGATCTGGGCCTGGAGCGATCACGGCCTGGGCGACATGAGCCGGAAATTGCACGATTGGGCGCGCGATTTCGGTCTGCGCGACGGGCAAAAACCCCGCGCGGTGTTGTTGAATAATTGGGAGGCGACGGGATTTGATTTTGATTTTGACCGCATTGCCAGTTTGTTTGCGCCCGCGAAGGAAATCGGCACGGAACTGTTTTTGTTGGACGACGGCTGGTTCGGCAACCAATATCCGCGCGTTAATGATCACGCCGGTTTGGGCGACTGGCAGCCGAACAAAAAGCGGTTGCCGAATGGTCTGGCGCCGCTGGCCAAAGCCGCCGTCAACGCCGGCCTGCGCTTCGGCATCTGGATGGAACCGGAAATGGTCAATCCCAACAGCGAATTGTTTCACGCGCATCCCGACTGGGTGATTCGCCAGCCGAAGCGCGAACTGGAATTGCAGCGCAACCAGCTCGTGCTGGATCTGACGCGTCCGGCCGTGCAGCAATTTGAATGGAACACCATCAGCAATATTTTGAGCACACCGGACATCAGTTATGCGAAATGGGATTGCAACCGTTACCTGACCCAGCCCGGCTCGCCTTATCTGGCAGCCGACCGGCAGTCGGATTTGTGGATTGATTATGTGCAGGCGCTGTATGCGCTGATGGACAAAACCGCCACGACGTTTCCGAACACGGAAATGATGCTGTGCTCCGGCGGCGGCGGGCGCGTGGATTACGGCGCGCTGAAATATTTCCAGGAATTCTGGCCCAGCGACAACACCGATCCGGTGGCGCGCGTGGCGATGCAATGGGATTATTCGTATTTCTTTCCGCCGCTGGCGATGGCCAGCCACGTCACGCATTGGGGCAATCGTCCGATGCACTTCGCATGCAGTGTGGCGATGAGCGCGCGTTTCGGCATGGACCTCGATCTCACGAAATTGTCTCCGCAGGACCAGGCAATTTGCGCGGGGGCGATCAGCGCCTACAAGCGGATTCGCGAGGTGACCCTGCTTGGCGATTTGTATCGGCTGGAAGATCCGCACAACCATTATCGTGGCGCGCTGAATTATGTCGCAAAACACAAAGCGCGCGCGGTGGTGTTTGTGTTTCAACTGCAAGCCGGCCGGAACGTCGTCGTGCGGCCGCAAGGTTTGGACCCGGCCAGACGCTATACCATTCATGAAATGAATCCAGCGCCCGGTCGGGCGGCGATGGAGCAGGAAGGACAAACCTTCACCGGGGCGGAATTAATGCGGAACGGGATTTTGCCATCGTGTTCCAAAGCGCTGGAAGCCTGCGTCGTCGAGCTAGGCTCATGA
PROTEIN sequence
Length: 859
MKHQFIRCLGLAVATCLAPTLCAETVSLSSLDLSRMTSGWSVPQAGHEIAGGPLSIRGEKFTDGVGTHATSKMRLSLNGNARRFTAEVGVDDSAGQEGSVEFVVGGDGKILWRSGVLKAGDPAKSLNVNLAGIKTLTLRVTDGGDGESNDHADWANAKIEMTAGAPLPVALPPNETFAVKTRSWAVNFEVGDDGRLYQRPIGAADSQTKLRRDGECYPQAGDGYVWEPALQVIHADGNTSTALVYDGRTQTSESPDMDLTQIELHDPAYPFKVTLNFRTHRDEDVIEQWTTIQNHETGVVTLKRLASSSLLFTTNVYLTHFFGDWAREMLHPITEPLTPGTKVLDSKLGVRADQFQNPNFILSLNGPATETSGDVLAGSLAWSGSFQFAFDDNAQGVRALCGINPFMSAYHLKPDGTFTTPKMIWAWSDHGLGDMSRKLHDWARDFGLRDGQKPRAVLLNNWEATGFDFDFDRIASLFAPAKEIGTELFLLDDGWFGNQYPRVNDHAGLGDWQPNKKRLPNGLAPLAKAAVNAGLRFGIWMEPEMVNPNSELFHAHPDWVIRQPKRELELQRNQLVLDLTRPAVQQFEWNTISNILSTPDISYAKWDCNRYLTQPGSPYLAADRQSDLWIDYVQALYALMDKTATTFPNTEMMLCSGGGGRVDYGALKYFQEFWPSDNTDPVARVAMQWDYSYFFPPLAMASHVTHWGNRPMHFACSVAMSARFGMDLDLTKLSPQDQAICAGAISAYKRIREVTLLGDLYRLEDPHNHYRGALNYVAKHKARAVVFVFQLQAGRNVVVRPQGLDPARRYTIHEMNPAPGRAAMEQEGQTFTGAELMRNGILPSCSKALEACVVELGS*