ggKbase home page

berkeley_reactor_200306_planktonic_scaffold_310897_72

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_58_30

near complete RP 49 / 55 BSCG 49 / 51 ASCG 14 / 38 MC: 1
Location: comp(113697..116660)

Top 3 Functional Annotations

Value Algorithm Source
Autotransporter-associated beta strand repeat protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XCZ2_9BACT similarity UNIREF
DB: UNIREF100
  • Identity: 25.6
  • Coverage: 1123.0
  • Bit_score: 223
  • Evalue 7.00e-55
Autotransporter-associated beta strand repeat protein {ECO:0000313|EMBL:EEF62338.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 25.6
  • Coverage: 1123.0
  • Bit_score: 223
  • Evalue 9.80e-55
filamentous hemagglutinin-like protein similarity KEGG
DB: KEGG
  • Identity: 23.5
  • Coverage: 1066.0
  • Bit_score: 142
  • Evalue 5.80e-31

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Pedosphaera parvula → Pedosphaera → Verrucomicrobiales → Verrucomicrobiae → Verrucomicrobia → Bacteria

Sequences

DNA sequence
Length: 2964
ATGAAAGATCAAAATTCAGCCCCTTGCCTCAGCCGCCGGTTGTTGGTGGTGCTCGGACTGGCGGCGGTTTCCGCCAGCAACGCTTTTGCCGATTATCAAAGCACGGTTTTGAGCGACCAGCCGGTGGCGTTTTATCCGATCAATGCGGATGTGGATCCGACGGGAACCACTGCGACCGATTTGTCCGGCAACGGCAACAACGGCACTTACAACGGCACCGACCCCGAATACAACACAGTGCCCGGTCCGTCGCCCTACATCCCGAACGCGCTTTATTTCGACGGGTTCACCTCGTATGTGGATCTGGGCACGGGCGGCAATCCCGGGTTGTTGAATTTCAGCGGCCCTGTCACGATGGAAGCCTGGGTGCAGCCGGCCAGTGCGACGGTCGGCTCCAGCCGTCCCGCCGATATTCTGGCCAAAGGGTATGACGGCACGAACGAACTGACCTTGCGGGCGAATGGCGGCTATTATTTCGGCGGCACTTACAGCAATGATGCCGGCGGACATGGCGCCGGCGGTGGCGTGCAGGACACGGACTGGACCCATCTGGTTTCGACTTACGACGGCACTAATTGGAATCTTTATGTGAACAGCGTGCTGGTGCAATCCAGCGCGGATGCCGTCGGCGCGATTGATTTTCCGGCTCCCTGGGCGATCGGCGACGGCACGACGGCCACGGCCGGCGACAATTCCGGCAGCTTGCGGTTTTTTGAAGGCAACCTTACCGAAGTGGCGCTCTACACCAAGGCCCTGACCCCGGCCCAGGTGCTGAACCACTTTTGCGTCGGTGAATTGGGCACCACGGCCGCCAGTTCCGTGCCGATTATCGTTAGCCAGCCGCAGCCGCAAACGGCTGTTTACGGCGGTTCGGCCACGTTCACGGTGCAGGCTGTGAGCGCGCTTGCCGTCACCAACCAATGGTATAAAAACAATGTTCCAATTGCCGATGCCACCAATGCCACTTTGAAGGTGAACAATGTGGCTGCCGGCGATGCCGTCAATTACAGCGTGGTGGTGGGCAACAGCAACGGCACCACCAACAGCGATGCAGTCAGCCTGACCGTGGTGGCGGCTAATTCCCTCAAATGGAATGCCGTCAACTCCAGTGACGTGTGGGATACCGGTGGCACGGCCAACTGGCTGGACGTCAGCAACAGCGCGCAGACGGTGTTCAGTCCGTTCGATCAGGTGTTGTTCGACGACACGGTGGGCGTTTCCAATAATGTCACCATCAACGGCACGGTTTCGCCCAGTCTCATTACGGTCAATTCCAGCACCAACAATTTCACATTTGCGCAAGGATCTTCGCCGGCGCTCAGTGGCACGGGCAGTTTGATCAAGCAAGGCAGCAGTTTATTGAGCATCTTTGCTCCGGCCGGTTTCGCTGGATCGGTCAGCGTTCAAGGTGGCTCGATCTACGCCGGGAACAATTGTTTCAAAAACGTGACGGCCATCACTGTCACCAACAACGCCACGCTGGACCTGGGCGGCGGCACGTTCAATGATAACAAGCCCATTACGGTTTCCGGCCTGGGCGTCAATGGCCAGGGTGCGCTTTACAACAGCTACGCCGACCAGCCCGGTGAACTGATCAACGTCACGCTGGCGGGCGACACCAAGTTTGGCAGCAGCGCCCGCTGGGATCTGGCCAACGGCTCACAAATCCACGGTCCGCACAACCTGACGATTGATTTCCAGGATTCCGGGGAGAATTACTATGGCCAGTGGAATTCGCCGATCATCGGCGCCGACGTTTTGGGAATCACGCTCACCAATCATACGGCGCTTGGAGCGGTCAACATGGATTCAAGTTTCCAGAATCCCGGCACGGTGGTCACCGTGAACCCCAACTGCCAGTTGCTCTTTTACGGCGGCGGCTGGAACGGCAGCCTGCACATTTTAAATGGCGGGGCCGCCTACCTTTGGTCGGCGCCGGCGGCTTTCACTGGCAGCAGCATCGTTTTGGAACAAGGCGCGCAATGGCAAAGCTATTACAATTCGGGGGATGAACCCATCAACAGCGTCATCACCCTGAACGGTGTCGCCCACTTCGTGATCGGTGATCACAATATGATTTATACCAATCTGATCAGCGGTCCGGGCGGCTTTGTGATGGACGCTTACAATCATCAAATGGTGTTCTCGGCGTCCAATACCTACTCGGGACCGACCGTAATCGGGGACGGTCCGCAAGTGGCCCTGACTGGCAATGGTTCCATTTCACACAGCTCGCTGATTTTCTTCGGCGGCAATAATTCGAGTTCGATTCATGTTGATGTGAGCGGGCGCGTTGATCAGACCCTGACGCTGGCCGCTGGCCAGACCTTGGCCGGCATCGGCGCCGTCAATGGCAGTTTGGTGGTTTCTCCCGGCGCAACGGTATCGCCGTCCGGAACCAATACAACAATCGGCATCACGGCCGGCTCCAGTCCGACCGGCACGTTGGCGGCGGCCAATAACGTAACCTTGAGCGGCACCACCATCATCAAACTGAACGGTTCCGGCACCAATGACGCGATTCAAGCCGGGGCGAGTCTGGCGTGTGGCGGCACTTTGGATTTGGAAAACACCAGCGGAACGCCATTGGCGGCGGGGGATACGTTCCAGATTTTCAACGCAGCGGACATTTCCGGTTCCTTCGCGCAAATCATTCCGGCAACACCCGGCGCGGGTTTGGCCTGGGACACCAACCAGTTGAGCAGCGGACAAATCCGGGTGGTGGCGGGTGGCTCCGGTCCGGTGGTGAGCAGCGTGTCCGTCGTCAACGGCAGCCTCGTATTGCGCGGCTCGGGAGGCACGGCCAGCGGCATTTATTATGTGTTGACCGCGACGAATCTGGCCACGCCGCTTTCGAGCTGGCTGCCGGTGATGACCAACACCTATGACGCGAGCGGCAATTTCACGATAACCAATGCCATTGATCCCGGCGTTGCCCGGCAGTTTTACCGCATACAGCAGTAA
PROTEIN sequence
Length: 988
MKDQNSAPCLSRRLLVVLGLAAVSASNAFADYQSTVLSDQPVAFYPINADVDPTGTTATDLSGNGNNGTYNGTDPEYNTVPGPSPYIPNALYFDGFTSYVDLGTGGNPGLLNFSGPVTMEAWVQPASATVGSSRPADILAKGYDGTNELTLRANGGYYFGGTYSNDAGGHGAGGGVQDTDWTHLVSTYDGTNWNLYVNSVLVQSSADAVGAIDFPAPWAIGDGTTATAGDNSGSLRFFEGNLTEVALYTKALTPAQVLNHFCVGELGTTAASSVPIIVSQPQPQTAVYGGSATFTVQAVSALAVTNQWYKNNVPIADATNATLKVNNVAAGDAVNYSVVVGNSNGTTNSDAVSLTVVAANSLKWNAVNSSDVWDTGGTANWLDVSNSAQTVFSPFDQVLFDDTVGVSNNVTINGTVSPSLITVNSSTNNFTFAQGSSPALSGTGSLIKQGSSLLSIFAPAGFAGSVSVQGGSIYAGNNCFKNVTAITVTNNATLDLGGGTFNDNKPITVSGLGVNGQGALYNSYADQPGELINVTLAGDTKFGSSARWDLANGSQIHGPHNLTIDFQDSGENYYGQWNSPIIGADVLGITLTNHTALGAVNMDSSFQNPGTVVTVNPNCQLLFYGGGWNGSLHILNGGAAYLWSAPAAFTGSSIVLEQGAQWQSYYNSGDEPINSVITLNGVAHFVIGDHNMIYTNLISGPGGFVMDAYNHQMVFSASNTYSGPTVIGDGPQVALTGNGSISHSSLIFFGGNNSSSIHVDVSGRVDQTLTLAAGQTLAGIGAVNGSLVVSPGATVSPSGTNTTIGITAGSSPTGTLAAANNVTLSGTTIIKLNGSGTNDAIQAGASLACGGTLDLENTSGTPLAAGDTFQIFNAADISGSFAQIIPATPGAGLAWDTNQLSSGQIRVVAGGSGPVVSSVSVVNGSLVLRGSGGTASGIYYVLTATNLATPLSSWLPVMTNTYDASGNFTITNAIDPGVARQFYRIQQ*