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berkeley_reactor_200306_planktonic_scaffold_310897_100

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_58_30

near complete RP 49 / 55 BSCG 49 / 51 ASCG 14 / 38 MC: 1
Location: comp(144447..145862)

Top 3 Functional Annotations

Value Algorithm Source
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase {ECO:0000256|RuleBase:RU004136}; EC=6.3.2.10 {ECO:0000256|RuleBase:RU004136};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 61.1
  • Coverage: 458.0
  • Bit_score: 546
  • Evalue 3.10e-152
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XIH1_9BACT similarity UNIREF
DB: UNIREF100
  • Identity: 61.1
  • Coverage: 458.0
  • Bit_score: 546
  • Evalue 2.20e-152
UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/D-alanyl-D-alanyl ligase similarity KEGG
DB: KEGG
  • Identity: 42.0
  • Coverage: 455.0
  • Bit_score: 323
  • Evalue 6.70e-86

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Taxonomy

Pedosphaera parvula → Pedosphaera → Verrucomicrobiales → Verrucomicrobiae → Verrucomicrobia → Bacteria

Sequences

DNA sequence
Length: 1416
ATGTGTGGGGATGAAAACGGAGTCGAATTTGTGGAATCACGTTCATTGAAATTTGTCTGCGAAGCGGCCGGCGGAACCCTGTTGAAAGGTGCGGCCGACGCGCTGTTTGGCCGTGTCTGCACGGATTCACGGCGGTTGCAGGCCGGGGATTTGTTCTTCGCCCTCAAGGGCGGGAACTTTGACGCGCACGCGTTCATCGGCCAGGCCGGCGAATTGGGCGCGGCCGGCGTGGTGATTTCACGCCACGCGGTTCCGGAGCAACTGCCCGGTTGCGCGGTCATTGCCGTGGACGAGCCGCGGGTTGCGCTGGGCAAACTGGCCGCCGCGCATCGCCGCGAATTCGCCCTGCCCATCGTGGCCGTCGGCGGTTCCAACGGCAAGACGACGGTCAAGGAATTGCTCGCCTCGGTGCTGCGCCAGAAGCTGTCCGCGCTGTGGAGCGAGGAAAGCTTCAACAACGACATCGGCGTGCCGTTGACGTTGCTGCGGCTGGAAAAATCGCACGCGGCGGCGGTCGTGGAGGTGGGCACCAACCATCCGGGCGAACTGGCGCCGCTGGTGGAAATGGTGCGCCCCACTGCGGGCGTCATCACGAACATCGGCCGCGAGCATCTGGAATTTTTTGGCGATGTCGCCGGCGTGGCGCAGGAGGAAGGCTGGCTGGCGGAATTGCTGCCGGCGAACGGAACCCTGTTTCTGAACGGCGACAGTGATTGGGCGGAGCCGATTGCGGCCCGGACCAGGGCCAAAGTCGTCCGTGTCGGTCTGGACAAGCAAAACGACTGGTGCGCGAAACGCATCCGCCTGGACAAGGGCGGGGTGACTTTTCAAGTGACGGCTCCGCAACCGGAATTTTGCGGTGAATACCGGGTGAATTTGCTCGGCCGCCATCAAGTGGTGAATGCCCTGCTGGCGATCGGGGTCGGTGAGGAACTAGGCCTGGGCCGCGCTGAAATTCAGCGCGGCCTGGCCGAATGCCAGCCGGCGAAGCGGCGCTTGAATTTCTGGGAAGCCAATGGCGTGCGCGTGCTGGACGACTGTTACAACGCGAACGCGGATTCGACGATTGCCGCGCTGGAAACGCTCTGCGGCCTGCCGTTGCAGGGACGCCGGGTGGCGGTGCTGGGCGACATGGCGGAACTCGGACTGACGAGCGAAGCCGCGCACGCGGAAATCGGCCGGCGCGCGGCGCAGTTGGAACTGGGCCAGTTGTTCGCCGTCGGCCGGATGGCGCCGGTGATGGCGCGGGCCGCGCGCGACGCCGGGCTGGTCCGGGTGTTTGAGTTCGGGGAGGTGGAGGGCGCGGTCATGGCGGTGAAAAAATTTTTAAAGCCCGGCGACGTGGTGTTGCTCAAGGCCTCCCGGGCCGCGCGGCTCGAACGCATTGCGGAAGCGCTGAAAGCTGACAAAAAATAG
PROTEIN sequence
Length: 472
MCGDENGVEFVESRSLKFVCEAAGGTLLKGAADALFGRVCTDSRRLQAGDLFFALKGGNFDAHAFIGQAGELGAAGVVISRHAVPEQLPGCAVIAVDEPRVALGKLAAAHRREFALPIVAVGGSNGKTTVKELLASVLRQKLSALWSEESFNNDIGVPLTLLRLEKSHAAAVVEVGTNHPGELAPLVEMVRPTAGVITNIGREHLEFFGDVAGVAQEEGWLAELLPANGTLFLNGDSDWAEPIAARTRAKVVRVGLDKQNDWCAKRIRLDKGGVTFQVTAPQPEFCGEYRVNLLGRHQVVNALLAIGVGEELGLGRAEIQRGLAECQPAKRRLNFWEANGVRVLDDCYNANADSTIAALETLCGLPLQGRRVAVLGDMAELGLTSEAAHAEIGRRAAQLELGQLFAVGRMAPVMARAARDAGLVRVFEFGEVEGAVMAVKKFLKPGDVVLLKASRAARLERIAEALKADKK*