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berkeley_reactor_200306_planktonic_scaffold_82142

Search features with annotation key words

Displaying items 31-60 of 87 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_82142_29
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

29927..30637
DNA (711bp) protein (237aa)
Two component transcriptional regulator, winged helix family n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PII2_CHIPD
winged helix family two component transcriptional regulator
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:ACU58171.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_planktonic_scaffold_82142_30
unknown

Not on your lists

30771..31010
DNA (240bp) protein (80aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_82142_31
unknown

Not on your lists

comp(31017..31391)
DNA (375bp) protein (125aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_82142_32
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(31508..32956)
DNA (1449bp) protein (483aa)
Glycine--tRNA ligase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TL38_NIAKG
Glycyl-tRNA synthetase {ECO:0000313|EMBL:GAO41685.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
glycyl-tRNA synthetase
berkeley_reactor_200306_planktonic_scaffold_82142_33
unknown

Not on your lists

33258..33542
DNA (285bp) protein (95aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_82142_34
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

33831..35909
DNA (2079bp) protein (693aa)
Polyphosphate kinase {ECO:0000256|RuleBase:RU003800, ECO:0000256|SAAS:SAAS00008191}; EC=2.7.4.1 {ECO:0000256|RuleBase:RU003800, ECO:0000256|SAAS:SAAS00008191};; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
Polyphosphate kinase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PAE3_CHIPD
polyphosphate kinase
berkeley_reactor_200306_planktonic_scaffold_82142_35
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

35984..36871
DNA (888bp) protein (296aa)
Ppx/GppA phosphatase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PAE2_CHIPD
Ppx/GppA phosphatase
Ppx/GppA phosphatase {ECO:0000313|EMBL:ACU61146.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_planktonic_scaffold_82142_36
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(36939..38186)
DNA (1248bp) protein (416aa)
HI0933 family protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TMD5_NIAKG
hypothetical protein
HI0933 family protein {ECO:0000313|EMBL:AEW00917.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
berkeley_reactor_200306_planktonic_scaffold_82142_37
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(38179..39618)
DNA (1440bp) protein (480aa)
Beta-N-acetylhexosaminidase {ECO:0000256|SAAS:SAAS00114579}; EC=3.2.1.52 {ECO:0000256|SAAS:SAAS00114579};; Flags: Precursor;; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
Beta-lactamase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PJZ6_CHIPD
beta-lactamase
berkeley_reactor_200306_planktonic_scaffold_82142_38
Cesiribacter andamanensis, Cesiribacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(39694..41352)
DNA (1659bp) protein (553aa)
Beta-N-acetylhexosaminidase {ECO:0000256|SAAS:SAAS00114579}; EC=3.2.1.52 {ECO:0000256|SAAS:SAAS00114579};; TaxID=1279009 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Flammeovirgaceae; Cesiribacter.;" source="Cesiribacter andamanensis AMV16.;"
nagA; b-glucosidase (EC:3.2.1.21)
Uncharacterized protein n=1 Tax=Cesiribacter andamanensis AMV16 RepID=M7N255_9BACT
berkeley_reactor_200306_planktonic_scaffold_82142_39
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(41416..43437)
DNA (2022bp) protein (674aa)
UvrABC system protein B n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PH61_CHIPD
UvrABC system protein B {ECO:0000256|HAMAP-Rule:MF_00204, ECO:0000256|RuleBase:RU003587}; Short=Protein UvrB {ECO:0000256|HAMAP-Rule:MF_00204};; Excinuclease ABC subunit B {ECO:0000256|HAMAP-Rule:MF_00204}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
excinuclease ABC subunit B
berkeley_reactor_200306_planktonic_scaffold_82142_40
Flavobacterium beibuense, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

43685..44668
DNA (984bp) protein (328aa)
Uncharacterized protein n=1 Tax=Flavobacterium enshiense DK69 RepID=V6SD08_9FLAO
Ribonuclease BN {ECO:0000313|EMBL:KGO80892.1}; TaxID=1406840 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium beibuense F44-8.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_82142_41
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(44719..44949)
DNA (231bp) protein (77aa)
4a-hydroxytetrahydrobiopterin dehydratase {ECO:0000256|SAAS:SAAS00118034}; EC=4.2.1.96 {ECO:0000256|SAAS:SAAS00118034};; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
Transcriptional coactivator/pterin dehydratase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PLG2_CHIPD
transcriptional coactivator/pterin dehydratase
berkeley_reactor_200306_planktonic_scaffold_82142_42
Sphingobacterium spiritivorum, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

45080..45856
DNA (777bp) protein (259aa)
Uncharacterized protein n=1 Tax=Sphingobacterium spiritivorum ATCC 33300 RepID=C2G0I8_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:EEI91368.1}; TaxID=525372 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium spiritivorum ATCC 33300.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_82142_43
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(45857..46318)
DNA (462bp) protein (154aa)
Uncharacterized protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PL51_CHIPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACU58395.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_planktonic_scaffold_82142_44
unknown

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comp(46322..46771)
DNA (450bp) protein (150aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_82142_45
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

47263..47892
DNA (630bp) protein (210aa)
Deoxynucleoside kinase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PQ48_CHIPD
deoxynucleoside kinase
Deoxynucleoside kinase {ECO:0000313|EMBL:ACU64286.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_planktonic_scaffold_82142_46
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(47908..49428)
DNA (1521bp) protein (507aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8THA7_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEW01717.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
berkeley_reactor_200306_planktonic_scaffold_82142_47
Flavobacterium sp. KMS, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

49583..49981
DNA (399bp) protein (133aa)
VanZ family protein n=1 Tax=Rhodothermus marinus SG0.5JP17-172 RepID=G2SDN1_RHOMR
Membrane protein {ECO:0000313|EMBL:KIA96119.1}; TaxID=1566023 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. KMS.;"
VanZ family protein
berkeley_reactor_200306_planktonic_scaffold_82142_48
Fulvivirga imtechensis, Fulvivirga, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

50145..52484
DNA (2340bp) protein (780aa)
Uncharacterized protein n=1 Tax=Fulvivirga imtechensis AK7 RepID=L8JPW4_9BACT
Uncharacterized protein {ECO:0000313|EMBL:ELR71001.1}; TaxID=1237149 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Flammeovirgaceae; Fulvivirga.;" source="Fulvivirga imtechensis AK7.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_82142_49
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(52561..54189)
DNA (1629bp) protein (543aa)
Methylcrotonoyl-CoA carboxylase {ECO:0000313|EMBL:ACU61116.1}; EC=6.4.1.4 {ECO:0000313|EMBL:ACU61116.1};; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
Methylcrotonoyl-CoA carboxylase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PAB2_CHIPD
methylcrotonoyl-CoA carboxylase
berkeley_reactor_200306_planktonic_scaffold_82142_50
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

54592..56871
DNA (2280bp) protein (760aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8THR2_NIAKG
Uncharacterized protein {ECO:0000313|EMBL:GAO41164.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_82142_51
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

57021..57800
DNA (780bp) protein (260aa)
Enoyl-CoA hydratase/isomerase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PDB6_CHIPD
Enoyl-CoA hydratase {ECO:0000313|EMBL:KIC89103.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
enoyl-CoA hydratase/isomerase
berkeley_reactor_200306_planktonic_scaffold_82142_52
unknown

Not on your lists

57978..59018
DNA (1041bp) protein (347aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_82142_53
CG_Beta_01, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(59106..59303)
DNA (198bp) protein (66aa)
Tax=CG_Beta_01
berkeley_reactor_200306_planktonic_scaffold_82142_trna_1
unknown

Not on your lists

59205..59278
DNA (74bp)
transferRNA Asp
berkeley_reactor_200306_planktonic_scaffold_82142_54
Chryseobacterium oranimense, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(59557..60207)
DNA (651bp) protein (217aa)
Putative NADH dehydrogenase/NAD(P)H nitroreductase D187_001895 n=1 Tax=Cystobacter fuscus DSM 2262 RepID=S9QUR4_9DELT
Putative malonic semialdehyde reductase RutE {ECO:0000313|EMBL:CEJ69701.1}; TaxID=1300143 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium oranimense G311.;"
malonic semialdehyde reductase
berkeley_reactor_200306_planktonic_scaffold_82142_55
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

60359..60946
DNA (588bp) protein (196aa)
Putative transcriptional regulator, Crp/Fnr family n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1YIW6_9SPHI
Putative transcriptional regulator, Crp/Fnr family {ECO:0000313|EMBL:EHQ27661.1}; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
putative transcriptional regulator, Crp/Fnr family
berkeley_reactor_200306_planktonic_scaffold_82142_56
unknown

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61088..61468
DNA (381bp) protein (127aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_82142_57
Leptospira kmetyi, Leptospira, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

61628..62077
DNA (450bp) protein (150aa)
DoxX family protein n=1 Tax=Leptospira kmetyi serovar Malaysia str. Bejo-Iso9 RepID=V6HJS5_9LEPT
DoxX family protein {ECO:0000313|EMBL:EQA53014.1}; TaxID=1049970 species="Bacteria; Spirochaetes; Leptospirales; Leptospiraceae; Leptospira.;" source="Leptospira kmetyi serovar Malaysia str. Bejo-Iso9.;"
hypothetical protein
Displaying items 31-60 of 87 in total

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