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berkeley_reactor_200306_planktonic_scaffold_26155_96

Organism: 2019_SCN_bioreactor_200211_planktonic_Bacteroidetes_50_37

near complete RP 49 / 55 MC: 1 BSCG 50 / 51 ASCG 14 / 38
Location: comp(120355..120918)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T9P2_NIAKG similarity UNIREF
DB: UNIREF100
  • Identity: 42.2
  • Coverage: 187.0
  • Bit_score: 150
  • Evalue 1.40e-33
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
  • Identity: 42.2
  • Coverage: 187.0
  • Bit_score: 150
  • Evalue 4.00e-34
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:AEW00235.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 42.2
  • Coverage: 187.0
  • Bit_score: 150
  • Evalue 2.00e-33

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Taxonomy

Niastella koreensis → Niastella → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 564
TTGTCTGCCAACAACTACAGGAATTTAACTGATGAAGACCTCGTACACCGGATTGCGACCAAGCAGGACCAGGAGGCATTCAGCACCCTGTACCAACGCTATGTGCACCTGGGCCTGGGTGTAGGCATCAAGTACCTGGGCAGCGCCGCACCGGCCGAAGATGCCGTACAGGCGGTATTTATCAAGCTCTGGACCGATGCGCATCAATACCAGATCCGGAAGTTCAAACCCTGGTTTTACCAGGTTATCAAGAACCATTGCCTGATGGAGCTGCGCAAAAAAGATCCCAGCAATAAAATTGTTGCCGAATGGGATATGGAACTTATGGAATTTGAGGAAACGCTGCATCATAAATTAAATGAAGAACAGTTGCTGGGCCACCTGAATAATTGCCTCAAAAACCTGAACGAAGAGCAACGCAACTGTGTAACCCATTTTTACCTCAACCAGAAAAGCTACCTCGAAACGGCAGGCCTGACCGGCTTTTCCGATAAACAGGTAAAAAGCCATATTCAGAACGGGAGAAGGAACCTTAAAATCTGTCTGCGCCAGAAATTGGCATAA
PROTEIN sequence
Length: 188
LSANNYRNLTDEDLVHRIATKQDQEAFSTLYQRYVHLGLGVGIKYLGSAAPAEDAVQAVFIKLWTDAHQYQIRKFKPWFYQVIKNHCLMELRKKDPSNKIVAEWDMELMEFEETLHHKLNEEQLLGHLNNCLKNLNEEQRNCVTHFYLNQKSYLETAGLTGFSDKQVKSHIQNGRRNLKICLRQKLA*