ggKbase home page

berkeley_reactor_200306_planktonic_scaffold_26155_110

Organism: 2019_SCN_bioreactor_200211_planktonic_Bacteroidetes_50_37

near complete RP 49 / 55 MC: 1 BSCG 50 / 51 ASCG 14 / 38
Location: comp(133914..134690)

Top 3 Functional Annotations

Value Algorithm Source
DNA polymerase III epsilon subunit-like 3'-5' exonuclease n=2 Tax=Alistipes RepID=I3YQS3_ALIFI similarity UNIREF
DB: UNIREF100
  • Identity: 61.8
  • Coverage: 254.0
  • Bit_score: 323
  • Evalue 9.90e-86
DNA polymerase III subunit epsilon {ECO:0000313|EMBL:KIC90229.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 61.8
  • Coverage: 254.0
  • Bit_score: 325
  • Evalue 3.70e-86
DNA polymerase III subunit epsilon-like 3'-5' exonuclease similarity KEGG
DB: KEGG
  • Identity: 61.8
  • Coverage: 254.0
  • Bit_score: 323
  • Evalue 2.80e-86

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Flavihumibacter sp. ZG627 → Flavihumibacter → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 777
ATGGCACAATTACAATTACAGAGACCCATCGCTTTTTTTGACCTGGAAACTACAGGAATAGACTCGGCTAAGGACCGCATCGTCGAGATTGCGGTCGTAAAGCTGATGCCCGACGGACAAAGGATATCCTGGGTAAAAAAGATAAACCCTGAAATGCCTATCCCGGCCGAATCTTCGGCGATCCACGGCATCTACGATGACGATGTAAAAGACGAACCATCCTTCAAACAGGTTGCCCACGAACTGAAACAGTTCCTGCAGCATTGCGATCTCGGTGGTTATAACTCCAATAAATTTGACATTCCCGTACTGGCCGAAGAATTCCTGAGAGCGGGTATACCCGTCGATTTCAAGGAACGGAAATTTGTAGATGTACAACAGATCTTTTTTAAGAAAGAGGCCCGGACGCTGAGCGCTGCCTATGCTTTCTATTGCAATAAGGAAATGGAGAATGCACACAGTGCCGAAGCCGATGTGCTGGCAACCGTTTCCGTACTCGAAGCGCAACTGGATAAATACGGCGACCTGACCAATGATGTACCGGCCTTACACGAATATACCGGCGGAGACGAATTTGTAGACTATGCGCGCCGTATGATCCTGAAAAATGGTGTACCGGTATTTAACTTTGGCAAATACAAGGGTATCCCGGTGGAAGATGTGTTCCGTAAAGAACCGCAATACTACGACTGGATGATGAATGCGGACTTTGCCCTGCACACGAAACAGATGATATCGGAAATTTTAAACAAGATGTTACTCCGGAAAAATAAATAA
PROTEIN sequence
Length: 259
MAQLQLQRPIAFFDLETTGIDSAKDRIVEIAVVKLMPDGQRISWVKKINPEMPIPAESSAIHGIYDDDVKDEPSFKQVAHELKQFLQHCDLGGYNSNKFDIPVLAEEFLRAGIPVDFKERKFVDVQQIFFKKEARTLSAAYAFYCNKEMENAHSAEADVLATVSVLEAQLDKYGDLTNDVPALHEYTGGDEFVDYARRMILKNGVPVFNFGKYKGIPVEDVFRKEPQYYDWMMNADFALHTKQMISEILNKMLLRKNK*