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berkeley_reactor_200306_planktonic_scaffold_26454_206

Organism: 2019_SCN_bioreactor_200211_planktonic_Bacteroidetes_50_37

near complete RP 49 / 55 MC: 1 BSCG 50 / 51 ASCG 14 / 38
Location: comp(214287..215687)

Top 3 Functional Annotations

Value Algorithm Source
RNA-splicing ligase RtcB {ECO:0000256|RuleBase:RU371113}; EC=6.5.1.- {ECO:0000256|RuleBase:RU371113};; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 71.7
  • Coverage: 466.0
  • Bit_score: 680
  • Evalue 1.10e-192
RNA-splicing ligase RtcB n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PV79_CHIPD similarity UNIREF
DB: UNIREF100
  • Identity: 71.7
  • Coverage: 466.0
  • Bit_score: 680
  • Evalue 7.50e-193
hypothetical protein similarity KEGG
DB: KEGG
  • Identity: 71.7
  • Coverage: 466.0
  • Bit_score: 680
  • Evalue 2.10e-193

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Taxonomy

Chitinophaga pinensis → Chitinophaga → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 1401
ATGAGCAATCTTAAAACAAAAGAACTGAGTAAAATAGGCTATACCGACGATATAGCCCGCAGCCTGGCGATCAATACGCTTGCCAAACATTATAAACACAGCAGCAAAGCCGAATGCCTGGCCTTATTGACGAACCTTAAAAACAACCCTGAAGATTATGTAAACGACGAACACCTGGGCAGGCTTGCCGCTGCCTTTATCACAACAGAAAAAGAAGACGGATACCAAAGCTTCGACCTGGTAGAACAAACGGGGCCGCTTAAACTCTATGGCGCTAAACATATAGAGGCCTCTGCCAAAAGACAGATGGAGCTGGCGATGTCGCTGCCGATTGTACTGCAGGGCGCTTTGATGCCCGATGCCCATACCGGTTATGGCTTACCCATCGGCGGAGTGCTGGCTACAAAAGGGGCCGTGGTACCCTATGCCGTAGGTGTGGATATCGGTTGCCGTATGGCCCTGTCGCTGATCGACGAGGGCGAGCGTTATCTCGAAACCCATACCTGGCATTTAAAAAAGGCGCTGGGCGATCATACCCACTTTGGGATGGAAGGCGGTCTGGACAACCCGCAGGAGCACGCAATACTGGACCACCCGGACTTTAAGACCACTACCCTGTTGCGCAAACTGCAGGCCAAGGCGGTGCGGCAATTAGGTACCTCGGGCAGTGGCAACCACTTCGTAGAGTTTGGCCTGGTGGAACTCAAGGAAGATAACATGTTCGGCTTGCCGGCGCGTAAGTATGTCGCACTACTCTCGCATTCCGGTAGCCGTGGCCTGGGCGCCAATATTGCACAACACTATACGGCTATAGCTATGGATACCTGCAAACTGCCGCGTACCGCACAACAGTTGGCCTGGCTGGATATCAACAGCGAAGCCGGTAGCGAGTACTGGTTGAGTATGAACCTGGCCGGGGCTTATGCACAGGCCTGTCACGACCGTATCCATGCCAACCTGCTACGGGCGCTGGGCCTGCAAAGTATTCTGAAGGTCGAGAACCACCACAATTTCGCCTGGAAAGATACCCTGGCCGATGGCCGTGAGGTATTCCTGCATCGCAAGGGCGCTACGCCTGCGCACAAAGGAGAGGCCGGTATCATTCCCGGCAGTATGACCACACCGGCATATCTCGTGTGTGGTAAGGGCGAGCCGGGTGCGCTCTATTCCGCATCGCACGGCGCCGGCAGGGCTATGAGTCGTAAGCGGGCCCGCGAGAGCATGACGGTATCTGGGCTTAAAAAGATACTGGCTACGGCAGGTGTAAGCCTGCAGGGCGGCAGCGTGGAAGAGTTTCCCGGCGCCTATAAGGATATCGATAAAATAATCGCGGCGCAGCAGGACCTGGTCGATATACAGGGCAAGTTCTGGCCCAAAATAGTGCGCATGCATAAAGAATAA
PROTEIN sequence
Length: 467
MSNLKTKELSKIGYTDDIARSLAINTLAKHYKHSSKAECLALLTNLKNNPEDYVNDEHLGRLAAAFITTEKEDGYQSFDLVEQTGPLKLYGAKHIEASAKRQMELAMSLPIVLQGALMPDAHTGYGLPIGGVLATKGAVVPYAVGVDIGCRMALSLIDEGERYLETHTWHLKKALGDHTHFGMEGGLDNPQEHAILDHPDFKTTTLLRKLQAKAVRQLGTSGSGNHFVEFGLVELKEDNMFGLPARKYVALLSHSGSRGLGANIAQHYTAIAMDTCKLPRTAQQLAWLDINSEAGSEYWLSMNLAGAYAQACHDRIHANLLRALGLQSILKVENHHNFAWKDTLADGREVFLHRKGATPAHKGEAGIIPGSMTTPAYLVCGKGEPGALYSASHGAGRAMSRKRARESMTVSGLKKILATAGVSLQGGSVEEFPGAYKDIDKIIAAQQDLVDIQGKFWPKIVRMHKE*