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berkeley_reactor_200306_planktonic_scaffold_26454

Search features with annotation key words

Displaying items 181-210 of 418 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_26454_177
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

188423..189265
DNA (843bp) protein (281aa)
prsA; phosphoribosylpyrophosphate synthetase (EC:2.7.6.1)
phosphoribosylpyrophosphate synthetase n=1 Tax=Mesoflavibacter zeaxanthinifaciens RepID=UPI000255B556
Putative ribose-phosphate pyrophosphokinase {ECO:0000313|EMBL:GAO43193.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
berkeley_reactor_200306_planktonic_scaffold_26454_178
unknown

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comp(189274..189435)
DNA (162bp) protein (54aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_26454_179
unknown

Not on your lists

comp(189484..189789)
DNA (306bp) protein (102aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_26454_180
unknown

Not on your lists

comp(189825..190130)
DNA (306bp) protein (102aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_26454_181
unknown

Not on your lists

comp(190180..190485)
DNA (306bp) protein (102aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_26454_182
Capnocytophaga sp. oral taxon 863, Capnocytophaga, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(190791..191708)
DNA (918bp) protein (306aa)
Uncharacterized protein n=1 Tax=Capnocytophaga sp. oral taxon 863 str. F0517 RepID=U2AXK7_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:ERI64855.1}; TaxID=1227266 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Capnocytophaga.;" source="Capnocytophaga sp. oral taxon 863 str. F0517.;"
polynucleotide 5'-hydroxyl-kinase
berkeley_reactor_200306_planktonic_scaffold_26454_183
Capnocytophaga cynodegmi, Capnocytophaga, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(191730..192935)
DNA (1206bp) protein (402aa)
hypothetical protein n=1 Tax=Capnocytophaga cynodegmi RepID=UPI0003669878
Uncharacterized protein {ECO:0000313|EMBL:CEN38926.1}; TaxID=28189 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Capnocytophaga.;" source="Capnocytophaga cynodegmi.;"
metallophosphoesterase
berkeley_reactor_200306_planktonic_scaffold_26454_184
Capnocytophaga sp. CM59, Capnocytophaga, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(192942..194270)
DNA (1329bp) protein (443aa)
Uncharacterized protein n=1 Tax=Capnocytophaga sp. CM59 RepID=J4X2K1_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:EJU30246.1}; TaxID=936370 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Capnocytophaga.;" source="Capnocytophaga sp. CM59.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_26454_185
Flavobacterium sp. KMS, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(194418..195272)
DNA (855bp) protein (285aa)
Polynucleotide 5'-hydroxyl-kinase n=1 Tax=Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 / NCIMB 11436 / LSU 4) RepID=F8EII8_RUNSL
Polynucleotide kinase {ECO:0000313|EMBL:KIA97605.1}; TaxID=1566023 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. KMS.;"
polynucleotide 5'-hydroxyl-kinase
berkeley_reactor_200306_planktonic_scaffold_26454_186
unknown

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comp(195295..195948)
DNA (654bp) protein (218aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_26454_187
Bacillus phage G, Caudovirales, Viruses

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comp(195945..196649)
DNA (705bp) protein (235aa)
Gp109 n=1 Tax=Bacillus phage G RepID=G3MBH1_9CAUD
Gp109 {ECO:0000313|EMBL:AEO93371.1}; TaxID=1084719 species="Viruses; dsDNA viruses, no RNA stage; Caudovirales; Myoviridae.;" source="Bacillus phage G.;"
berkeley_reactor_200306_planktonic_scaffold_26454_188
Flavobacterium sp. KMS, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(196666..197691)
DNA (1026bp) protein (342aa)
RNA ligase, T4 RnlA n=1 Tax=Pseudanabaena biceps PCC 7429 RepID=L8MQJ2_9CYAN
Uncharacterized protein {ECO:0000313|EMBL:KIA97604.1}; TaxID=1566023 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. KMS.;"
RNA ligase
berkeley_reactor_200306_planktonic_scaffold_26454_189
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(197702..198769)
DNA (1068bp) protein (356aa)
Nucleotidyltransferase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TRM0_NIAKG
nucleotidyltransferase
Nucleotidyltransferase {ECO:0000313|EMBL:AEW02167.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
berkeley_reactor_200306_planktonic_scaffold_26454_190
Pedobacter kyungheensis, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(198753..199517)
DNA (765bp) protein (255aa)
Uncharacterized protein n=1 Tax=Pedobacter sp. BAL39 RepID=A6EDZ0_9SPHI
Nucleotidyltransferase {ECO:0000313|EMBL:KIA91422.1}; TaxID=1069985 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter kyungheensis.;"
nucleotidyltransferase
berkeley_reactor_200306_planktonic_scaffold_26454_191
Flavobacterium sp. 316, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(199527..199913)
DNA (387bp) protein (129aa)
Gp208 n=1 Tax=Bacillus phage G RepID=G3MBS4_9CAUD
Uncharacterized protein {ECO:0000313|EMBL:KIX20175.1}; TaxID=1603293 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. 316.;"
berkeley_reactor_200306_planktonic_scaffold_26454_192
Flavobacterium reichenbachii, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(199934..200263)
DNA (330bp) protein (110aa)
Uncharacterized protein {ECO:0000313|EMBL:KFF05408.1}; TaxID=362418 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium reichenbachii.;"
berkeley_reactor_200306_planktonic_scaffold_26454_193
Aquimarina atlantica, Aquimarina, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(200300..200845)
DNA (546bp) protein (182aa)
Exonuclease, RNase T and DNA polymerase III n=1 Tax=Nonlabens dokdonensis (strain DSM 17205 / KCTC 12402 / DSW-6) RepID=L7W9M7_NONDD
DNA polymerase III {ECO:0000313|EMBL:EZH73538.1}; TaxID=1317122 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Aquimarina.;" source="Aquimarina atlantica.;"
exonuclease, RNase T and DNA polymerase III
berkeley_reactor_200306_planktonic_scaffold_26454_194
Flavobacterium johnsoniae, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(200842..201177)
DNA (336bp) protein (112aa)
Putative prophage repressor n=1 Tax=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) RepID=A5FAM2_FLAJ1
prophage repressor
Putative prophage repressor {ECO:0000313|EMBL:ABQ07742.1}; TaxID=376686 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101); (Cytophaga johnsonae).;"
berkeley_reactor_200306_planktonic_scaffold_26454_195
Pedobacter kyungheensis, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(201243..202340)
DNA (1098bp) protein (366aa)
Uncharacterized protein n=1 Tax=Sphingobacterium sp. IITKGP-BTPF85 RepID=T0P7P1_9SPHI
Peptidase {ECO:0000313|EMBL:KIA91421.1}; TaxID=1069985 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter kyungheensis.;"
peptidase
berkeley_reactor_200306_planktonic_scaffold_26454_196
Chryseobacterium soli, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

203209..203988
DNA (780bp) protein (260aa)
hypothetical protein n=1 Tax=Pedobacter agri RepID=UPI00029A5E80
Uncharacterized protein {ECO:0000313|EMBL:KFF12879.1}; TaxID=445961 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium soli.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_26454_197
Epilithonimonas sp. FH1, Epilithonimonas, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

204045..204407
DNA (363bp) protein (121aa)
Uncharacterized protein n=1 Tax=Chryseobacterium sp. CF314 RepID=J2KFB5_9FLAO
Alpha/beta hydrolase {ECO:0000313|EMBL:KFC22833.1}; TaxID=1233951 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Epilithonimonas.;" source="Epilithonimonas sp. FH1.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_26454_198
Kordia algicida, Kordia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(204809..206458)
DNA (1650bp) protein (550aa)
hypothetical protein n=1 Tax=Butyricimonas synergistica RepID=UPI00036AF445
Uncharacterized protein {ECO:0000313|EMBL:EDP98294.1}; TaxID=391587 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Kordia.;" source="Kordia algicida OT-1.;"
ribonucleoprotein family protein
berkeley_reactor_200306_planktonic_scaffold_26454_199
Pedobacter sp. BAL39, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

206634..207662
DNA (1029bp) protein (343aa)
Uncharacterized protein n=1 Tax=Pedobacter sp. BAL39 RepID=A6EDZ5_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:EDM36483.1}; TaxID=391596 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. BAL39.;"
transcriptional regulator
berkeley_reactor_200306_planktonic_scaffold_26454_200
Pedobacter kyungheensis, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(207657..208973)
DNA (1317bp) protein (439aa)
Putative uncharacterized protein n=1 Tax=Cellulophaga algicola (strain DSM 14237 / IC166 / ACAM 630) RepID=E6X8Q2_CELAD
Uncharacterized protein {ECO:0000313|EMBL:KIA93356.1}; TaxID=1069985 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter kyungheensis.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_26454_201
Pedobacter kyungheensis, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(208977..211022)
DNA (2046bp) protein (682aa)
Uncharacterized protein n=1 Tax=Pedobacter sp. BAL39 RepID=A6EIC1_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:KIA93357.1}; TaxID=1069985 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter kyungheensis.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_26454_202
Pedobacter kyungheensis, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(211028..211705)
DNA (678bp) protein (226aa)
Uncharacterized protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PJC8_CHIPD
Uncharacterized protein {ECO:0000313|EMBL:KIA93358.1}; TaxID=1069985 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter kyungheensis.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_26454_203
Xenorhabdus bovienii, Xenorhabdus, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(211842..212948)
DNA (1107bp) protein (369aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI00037BC25D
conserved protein of unknown function
Uncharacterized protein {ECO:0000313|EMBL:CDG95119.1}; TaxID=1398201 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Xenorhabdus.;" source="Xenorhabdus bovienii str. puntauvense.;"
berkeley_reactor_200306_planktonic_scaffold_26454_204
Bacteroides intestinalis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(212945..213646)
DNA (702bp) protein (234aa)
Uncharacterized protein n=1 Tax=Bacteroides intestinalis DSM 17393 RepID=B3CFE6_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EDV05181.1}; TaxID=471870 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides intestinalis DSM 17393.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_26454_205
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(213659..214276)
DNA (618bp) protein (206aa)
hypothetical protein n=1 Tax=Cytophagales str. B6 RepID=UPI0003B5EB80
Peptide chain release factor H {ECO:0000313|EMBL:KIC94049.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
prfH; peptide chain release factor-like protein
berkeley_reactor_200306_planktonic_scaffold_26454_206
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(214287..215687)
DNA (1401bp) protein (467aa)
RNA-splicing ligase RtcB {ECO:0000256|RuleBase:RU371113}; EC=6.5.1.- {ECO:0000256|RuleBase:RU371113};; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
RNA-splicing ligase RtcB n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PV79_CHIPD
hypothetical protein
Displaying items 181-210 of 418 in total

View Taxonomy