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berkeley_reactor_200306_planktonic_scaffold_26454

Search features with annotation key words

Displaying items 151-180 of 418 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_26454_147
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

157987..159321
DNA (1335bp) protein (445aa)
Amidohydrolase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PSP8_CHIPD
dihydroorotase
Dihydroorotase {ECO:0000256|SAAS:SAAS00252556}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_planktonic_scaffold_26454_148
Pedobacter kyungheensis, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

159449..159964
DNA (516bp) protein (172aa)
GCN5-related N-acetyltransferase n=1 Tax=Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767 / O) RepID=F4KQ82_HALH1
GNAT family acetyltransferase {ECO:0000313|EMBL:KIA95401.1}; TaxID=1069985 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter kyungheensis.;"
N-acetyltransferase GCN5
berkeley_reactor_200306_planktonic_scaffold_26454_149
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(160023..161189)
DNA (1167bp) protein (389aa)
Proline dehydrogenase {ECO:0000313|EMBL:ACU63859.1}; EC=1.5.99.8 {ECO:0000313|EMBL:ACU63859.1};; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
Proline dehydrogenase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PKU9_CHIPD
proline dehydrogenase
berkeley_reactor_200306_planktonic_scaffold_26454_150
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(161303..164155)
DNA (2853bp) protein (951aa)
peptidase M16 n=1 Tax=Niabella aurantiaca RepID=UPI000373A309
Peptidase M16 {ECO:0000313|EMBL:KIC93257.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
peptidase M16
berkeley_reactor_200306_planktonic_scaffold_26454_151
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(164291..165271)
DNA (981bp) protein (327aa)
NAD-dependent epimerase/dehydratase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PIJ9_CHIPD
NAD-dependent epimerase/dehydratase
NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:ACU58188.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_planktonic_scaffold_26454_152
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(165393..166421)
DNA (1029bp) protein (343aa)
Phenylalanine--tRNA ligase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00016813}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00089474};; Phenylalanyl-tRNA synthetase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
Phenylalanine--tRNA ligase alpha subunit n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PIK1_CHIPD
phenylalanyl-tRNA synthetase subunit alpha
berkeley_reactor_200306_planktonic_scaffold_26454_153
unknown

Not on your lists

comp(166521..166817)
DNA (297bp) protein (99aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_26454_154
GWA2_Bacteroidetes_40_15_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(167028..167933)
DNA (906bp) protein (302aa)
Putative uncharacterized protein id=4331765 bin=GWF2_Bacteroidetes_41_9 species=unknown genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Bacteroidetes_41_9 organism_group=Bacteroidetes
hypothetical protein
Tax=GWA2_Bacteroidetes_40_15_curated
berkeley_reactor_200306_planktonic_scaffold_26454_155
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

168140..169468
DNA (1329bp) protein (443aa)
DEAD/DEAH box helicase domain protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PLC4_CHIPD
DEAD/DEAH box helicase
DEAD/DEAH box helicase domain protein {ECO:0000313|EMBL:ACU58468.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_planktonic_scaffold_26454_156
unknown

Not on your lists

comp(169796..170575)
DNA (780bp) protein (260aa)
hypothetical protein n=1 Tax=Hymenobacter norwichensis RepID=UPI0003B51EFE
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_26454_157
Dokdonia sp. 4H-3-7-5, Dokdonia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(170593..172755)
DNA (2163bp) protein (721aa)
hypothetical protein n=1 Tax=Pedobacter agri RepID=UPI00029AB9CD
conserved repeat domain-containing protein
Conserved repeat domain protein {ECO:0000313|EMBL:AEE20301.1}; TaxID=983548 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Dokdonia.;" source="Dokdonia sp. (strain 4H-3-7-5) (Krokinobacter sp. (strain 4H-3-7-5)).;"
berkeley_reactor_200306_planktonic_scaffold_26454_158
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

173204..173863
DNA (660bp) protein (220aa)
Two component transcriptional regulator, LuxR family n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PMV2_CHIPD
LuxR family transcriptional regulator
Two component transcriptional regulator, LuxR family {ECO:0000313|EMBL:ACU60386.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_planktonic_scaffold_26454_159
Lyngbya sp. PCC 8106, Lyngbya, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(173946..175928)
DNA (1983bp) protein (661aa)
Uncharacterized protein n=1 Tax=Lyngbya sp. (strain PCC 8106) RepID=A0YNN8_LYNSP
Uncharacterized protein {ECO:0000313|EMBL:EAW37358.1}; TaxID=313612 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Lyngbya.;" source="Lyngbya sp. (strain PCC 8106) (Lyngbya aestuarii (strain CCY9616)).;"
outer membrane adhesin-like protein
berkeley_reactor_200306_planktonic_scaffold_26454_160
unknown

Not on your lists

comp(175984..176100)
DNA (117bp) protein (39aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_26454_161
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

176388..177026
DNA (639bp) protein (213aa)
Two component transcriptional regulator, LuxR family n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VY14_DYAFD
two component LuxR family transcriptional regulator
Two component transcriptional regulator, LuxR family {ECO:0000313|EMBL:ACT96915.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
berkeley_reactor_200306_planktonic_scaffold_26454_162
Runella slithyformis, Runella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(177095..178348)
DNA (1254bp) protein (418aa)
DEAD/DEAH box helicase domain protein n=1 Tax=Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 / NCIMB 11436 / LSU 4) RepID=F8EP18_RUNSL
DEAD/DEAH box helicase
DEAD/DEAH box helicase domain protein {ECO:0000313|EMBL:AEI51344.1}; TaxID=761193 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Runella.;" source="Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 /; NCIMB 11436 / LSU 4).;"
berkeley_reactor_200306_planktonic_scaffold_26454_163
unknown

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comp(178492..179187)
DNA (696bp) protein (232aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_26454_164
unknown

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comp(179209..179343)
DNA (135bp) protein (45aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_26454_165
unknown

Not on your lists

comp(179359..180054)
DNA (696bp) protein (232aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_26454_166
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

180290..180976
DNA (687bp) protein (229aa)
NUDIX hydrolase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PBV1_CHIPD
NUDIX hydrolase
NUDIX hydrolase {ECO:0000313|EMBL:ACU57579.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_planktonic_scaffold_26454_167
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

180976..182478
DNA (1503bp) protein (501aa)
putative nicotinate phosphoribosyltransferase (EC:2.4.2.12)
Putative nicotinate phosphoribosyltransferase n=1 Tax=Fibrella aestuarina BUZ 2 RepID=I0KH31_9BACT
Nicotinamide phosphoribosyltransferase {ECO:0000313|EMBL:GAO43194.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
berkeley_reactor_200306_planktonic_scaffold_26454_168
Microscilla marina, Microscilla, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

182519..183364
DNA (846bp) protein (282aa)
Uncharacterized protein n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZV16_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EAY25794.1}; TaxID=313606 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Microscilla.;" source="Microscilla marina ATCC 23134.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_26454_169
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

183390..184019
DNA (630bp) protein (210aa)
hypothetical protein n=1 Tax=Lewinella persica RepID=UPI00036FAD61
Putative uncharacterized protein {ECO:0000313|EMBL:EHQ30264.1}; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_26454_170
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

184030..184443
DNA (414bp) protein (138aa)
Uncharacterized protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PT21_CHIPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACU59060.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_planktonic_scaffold_26454_171
Fibrella aestuarina, Fibrella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

184440..184994
DNA (555bp) protein (185aa)
Uncharacterized protein n=1 Tax=Fibrella aestuarina BUZ 2 RepID=I0K4W9_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCG99172.1}; TaxID=1166018 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrella.;" source="Fibrella aestuarina BUZ 2.;"
berkeley_reactor_200306_planktonic_scaffold_26454_172
Chryseobacterium sp. StRB126, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

184991..185464
DNA (474bp) protein (158aa)
Putative uncharacterized protein n=1 Tax=Streptomyces sp. Mg1 RepID=B4V1L1_9ACTO
appr-1-p processing domain protein
Appr-1-p processing domain protein {ECO:0000313|EMBL:BAP29611.1}; TaxID=878220 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium sp. StRB126.;"
berkeley_reactor_200306_planktonic_scaffold_26454_173
Flavobacterium reichenbachii, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

185506..186048
DNA (543bp) protein (181aa)
Probable RNA 2'-phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00299}; EC=2.7.1.- {ECO:0000256|HAMAP-Rule:MF_00299};; TaxID=362418 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium reichenbachii.;"
RNA 2''''-phosphotransferase n=1 Tax=Flavobacterium sp. WG21 RepID=UPI00034CFE23
phosphotransferase KptA/Tpt1
berkeley_reactor_200306_planktonic_scaffold_26454_174
Flavobacterium sp. F52, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

186062..186610
DNA (549bp) protein (183aa)
Putative iron-regulated protein n=1 Tax=Flavobacterium sp. F52 RepID=J0RR64_9FLAO
Putative iron-regulated protein {ECO:0000313|EMBL:EJG01537.1}; TaxID=1202532 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. F52.;"
2OG-Fe(II) oxygenase family oxidoreductase
berkeley_reactor_200306_planktonic_scaffold_26454_175
Solitalea canadensis, Solitalea, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

186613..187581
DNA (969bp) protein (323aa)
ADP-ribosylglycohydrolase n=1 Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KPL5_SOLCM
ADP-ribosylglycohydrolase
ADP-ribosylglycohydrolase {ECO:0000313|EMBL:AFD05913.1}; TaxID=929556 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Solitalea.;" source="Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 /; NCIMB 12057 / USAM 9D) (Flexibacter canadensis).;"
berkeley_reactor_200306_planktonic_scaffold_26454_176
Solitalea canadensis, Solitalea, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

187584..188315
DNA (732bp) protein (244aa)
Uncharacterized protein n=1 Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KPL4_SOLCM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFD05912.1}; TaxID=929556 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Solitalea.;" source="Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 /; NCIMB 12057 / USAM 9D) (Flexibacter canadensis).;"
Displaying items 151-180 of 418 in total

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