ggKbase home page

berkeley_reactor_200306_planktonic_scaffold_26454

Search features with annotation key words

Displaying items 121-150 of 418 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_26454_117
Flavobacterium subsaxonicum, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(126300..126533)
DNA (234bp) protein (78aa)
Uncharacterized protein n=1 Tax=Flavobacterium sp. CF136 RepID=J3C7W4_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:KGO94710.1}; TaxID=1121898 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium subsaxonicum WB 4.1-42 = DSM 21790.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_26454_118
Flavobacterium saliperosum, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(126588..128114)
DNA (1527bp) protein (509aa)
Major facilitator superfamily (MFS) permease n=1 Tax=Flavobacterium saliperosum S13 RepID=V6SGD4_9FLAO
Major facilitator superfamily (MFS) permease {ECO:0000313|EMBL:ESU25519.1}; TaxID=1341155 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium saliperosum S13.;"
major facilitator transporter
berkeley_reactor_200306_planktonic_scaffold_26454_119
Flavobacterium indicum, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(128160..129551)
DNA (1392bp) protein (464aa)
Uncharacterized protein n=1 Tax=Flavobacterium indicum (strain DSM 17447 / CIP 109464 / GPTSA100-9) RepID=H8XQN4_FLAIG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCG53332.1}; TaxID=1094466 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium indicum (strain DSM 17447 / CIP 109464 / GPTSA100-9).;"
berkeley_reactor_200306_planktonic_scaffold_26454_120
Rhodonellum psychrophilum, Rhodonellum, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(129667..130089)
DNA (423bp) protein (141aa)
Transposase n=1 Tax=Rhodonellum psychrophilum GCM71 = DSM 17998 RepID=U5C1E3_9BACT
Transposase {ECO:0000313|EMBL:ERM83863.1}; TaxID=1123057 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Rhodonellum.;" source="Rhodonellum psychrophilum GCM71 = DSM 17998.;"
transposase
berkeley_reactor_200306_planktonic_scaffold_26454_121
Sporocytophaga myxococcoides, Sporocytophaga, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(131200..131799)
DNA (600bp) protein (200aa)
Putative transcriptional regulator, Crp/Fnr family n=1 Tax=Sphingobacterium sp. (strain 21) RepID=F4CF76_SPHS2
Uncharacterized protein {ECO:0000313|EMBL:GAL85907.1}; TaxID=153721 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Sporocytophaga.;" source="Sporocytophaga myxococcoides.;"
Crp/Fnr family transcriptional regulator
berkeley_reactor_200306_planktonic_scaffold_26454_122
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(131807..132595)
DNA (789bp) protein (263aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TN23_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEV97708.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
berkeley_reactor_200306_planktonic_scaffold_26454_123
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

132778..133650
DNA (873bp) protein (291aa)
Bifunctional protein FolD n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PR93_CHIPD
methenyltetrahydrofolate cyclohydrolase
Bifunctional protein FolD {ECO:0000256|HAMAP-Rule:MF_01576}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_planktonic_scaffold_26454_124
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

133650..134279
DNA (630bp) protein (210aa)
7-carboxy-7-deazaguanine synthase {ECO:0000256|HAMAP-Rule:MF_00917}; Short=CDG synthase {ECO:0000256|HAMAP-Rule:MF_00917};; EC=4.3.99.3 {ECO:0000256|HAMAP-Rule:MF_00917};; Queuosine biosynthesis protein QueE {ECO:0000256|HAMAP-Rule:MF_00917}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
7-carboxy-7-deazaguanine synthase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PR94_CHIPD
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_26454_125
Riemerella anatipestifer, Riemerella, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

134325..135143
DNA (819bp) protein (273aa)
Undecaprenyl-diphosphatase {ECO:0000256|HAMAP-Rule:MF_01006}; EC=3.6.1.27 {ECO:0000256|HAMAP-Rule:MF_01006};; Bacitracin resistance protein {ECO:0000256|HAMAP-Rule:MF_01006}; Undecaprenyl pyrophosphate phosphatase {ECO:0000256|HAMAP-Rule:MF_01006}; TaxID=693978 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Riemerella.;" source="Riemerella anatipestifer (strain ATCC 11845 / DSM 15868 / JCM 9532 /; NCTC 11014).;"
UDP pyrophosphate phosphatase n=1 Tax=Riemerella columbina RepID=UPI000363C08F
undecaprenyl-diphosphatase
berkeley_reactor_200306_planktonic_scaffold_26454_126
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(135234..135554)
DNA (321bp) protein (107aa)
Thioredoxin n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PLT3_CHIPD
thioredoxin
Thioredoxin {ECO:0000256|PIRNR:PIRNR000077}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_planktonic_scaffold_26454_127
Microscilla marina, Microscilla, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

135695..136267
DNA (573bp) protein (191aa)
KWG n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZP81_9BACT
KWG {ECO:0000313|EMBL:EAY27873.1}; TaxID=313606 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Microscilla.;" source="Microscilla marina ATCC 23134.;"
molecular chaperone DnaJ
berkeley_reactor_200306_planktonic_scaffold_26454_128
unknown

Not on your lists

136348..136560
DNA (213bp) protein (71aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_26454_129
BJP_IG2103_Bacteroidetes_37_22, Bacteroidetes, Bacteria

Not on your lists

136748..137569
DNA (822bp) protein (274aa)
Tax=BJP_IG2103_Bacteroidetes_37_22
berkeley_reactor_200306_planktonic_scaffold_26454_130
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(138109..141738)
DNA (3630bp) protein (1210aa)
DNA-directed DNA polymerase {ECO:0000256|SAAS:SAAS00057170}; EC=2.7.7.7 {ECO:0000256|SAAS:SAAS00057170};; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
DNA polymerase III, alpha subunit n=1 Tax=Niabella soli DSM 19437 RepID=H1NJS7_9SPHI
DNA polymerase III subunit alpha
berkeley_reactor_200306_planktonic_scaffold_26454_131
Dysgonomonas mossii, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

141844..143484
DNA (1641bp) protein (547aa)
Putative uncharacterized protein n=1 Tax=Dysgonomonas mossii DSM 22836 RepID=F8WWH3_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EGK06307.1}; TaxID=742767 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas mossii DSM 22836.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_26454_132
Flavobacterium sp. AED, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

143515..144003
DNA (489bp) protein (163aa)
Uncharacterized protein n=1 Tax=Sphingobacterium sp. (strain 21) RepID=F4CAK3_SPHS2
Uncharacterized protein {ECO:0000313|EMBL:KIA85522.1}; TaxID=1423323 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. AED.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_26454_133
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(144084..145835)
DNA (1752bp) protein (584aa)
Transcription termination factor Rho {ECO:0000256|HAMAP-Rule:MF_01884}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_01884};; ATP-dependent helicase Rho {ECO:0000256|HAMAP-Rule:MF_01884}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
Transcription termination factor Rho n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PLF9_CHIPD
transcription termination factor Rho
berkeley_reactor_200306_planktonic_scaffold_26454_134
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

146163..146816
DNA (654bp) protein (218aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI0003763C39
Thioredoxin {ECO:0000313|EMBL:KIC96424.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
thioredoxin
berkeley_reactor_200306_planktonic_scaffold_26454_135
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(146958..147680)
DNA (723bp) protein (241aa)
Pseudouridine synthase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PP03_CHIPD
pseudouridine synthase
Pseudouridine synthase {ECO:0000313|EMBL:ACU58700.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_planktonic_scaffold_26454_136
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(147677..148108)
DNA (432bp) protein (144aa)
Endoribonuclease YbeY {ECO:0000256|HAMAP-Rule:MF_00009}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00009};; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
Endoribonuclease YbeY n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PIQ5_CHIPD
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_26454_137
unknown

Not on your lists

comp(148131..148370)
DNA (240bp) protein (80aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_26454_138
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(148474..149310)
DNA (837bp) protein (279aa)
Elongation factor Ts n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PK40_CHIPD
translation elongation factor Ts
Elongation factor Ts {ECO:0000256|HAMAP-Rule:MF_00050, ECO:0000256|RuleBase:RU000642}; Short=EF-Ts {ECO:0000256|HAMAP-Rule:MF_00050};; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_planktonic_scaffold_26454_139
RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated, Bacteroidetes, Bacteria

Not on your lists

comp(149570..150562)
DNA (993bp) protein (331aa)
Uncharacterized protein n=1 Tax=Owenweeksia hongkongensis (strain DSM 17368 / JCM 12287 / NRRL B-23963) RepID=G8R819_OWEHD
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated
berkeley_reactor_200306_planktonic_scaffold_26454_140
Aequorivita sublithincola, Aequorivita, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(150626..151870)
DNA (1245bp) protein (415aa)
hypothetical protein n=1 Tax=Empedobacter brevis RepID=UPI0003653093
endonuclease/exonuclease/phosphatase family protein
Endonuclease/exonuclease/phosphatase family protein {ECO:0000313|EMBL:AFL82398.1}; Flags: Precursor;; TaxID=746697 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Aequorivita.;" source="Aequorivita sublithincola (strain DSM 14238 / LMG 21431 / ACAM 643 /; 9-3).;"
berkeley_reactor_200306_planktonic_scaffold_26454_141
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

151938..153059
DNA (1122bp) protein (374aa)
Uncharacterized protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PR75_CHIPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACU64314.1}; Flags: Precursor;; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_planktonic_scaffold_26454_142
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

153130..153834
DNA (705bp) protein (235aa)
Two component transcriptional regulator, winged helix family n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PP47_CHIPD
winged helix family two component transcriptional regulator
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:ACU58744.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_planktonic_scaffold_26454_143
unknown

Not on your lists

comp(154147..155148)
DNA (1002bp) protein (334aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_26454_144
Chlamydia trachomatis, Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

Not on your lists

155312..156007
DNA (696bp) protein (232aa)
LemA family protein n=1 Tax=Prevotella timonensis CRIS 5C-B1 RepID=D1VW28_9BACT
LemA family {ECO:0000313|EMBL:CRH72560.1}; TaxID=813 species="Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.;" source="Chlamydia trachomatis.;"
lemA; LemA-like protein
berkeley_reactor_200306_planktonic_scaffold_26454_145
Parabacteroides johnsonii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

156021..157001
DNA (981bp) protein (327aa)
Uncharacterized protein n=1 Tax=Parabacteroides johnsonii CL02T12C29 RepID=K5Z688_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN06881.1}; TaxID=999419 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides johnsonii CL02T12C29.;"
htpX; putative transmembrane protease HtpX
berkeley_reactor_200306_planktonic_scaffold_26454_146
BJP_IG2069_Bacteroidetes_43_11, Bacteroidetes, Bacteria

Not on your lists

157078..157899
DNA (822bp) protein (274aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TJB2_NIAKG
hypothetical protein
Tax=BJP_IG2069_Bacteroidetes_43_11
Displaying items 121-150 of 418 in total

View Taxonomy