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berkeley_reactor_200306_planktonic_scaffold_26454_158

Organism: 2019_SCN_bioreactor_200211_planktonic_Bacteroidetes_50_37

near complete RP 49 / 55 MC: 1 BSCG 50 / 51 ASCG 14 / 38
Location: 173204..173863

Top 3 Functional Annotations

Value Algorithm Source
Two component transcriptional regulator, LuxR family n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PMV2_CHIPD similarity UNIREF
DB: UNIREF100
  • Identity: 38.1
  • Coverage: 223.0
  • Bit_score: 165
  • Evalue 3.80e-38
LuxR family transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 38.1
  • Coverage: 223.0
  • Bit_score: 165
  • Evalue 1.10e-38
Two component transcriptional regulator, LuxR family {ECO:0000313|EMBL:ACU60386.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 38.1
  • Coverage: 223.0
  • Bit_score: 165
  • Evalue 5.40e-38

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Taxonomy

Chitinophaga pinensis → Chitinophaga → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 660
ATGATAAATATTTTAGTTGTCGATCACCATCCCATTTTCCGGTTAGGGTTGAAACATCTGCTTTCGCAGGTCCCGGAGTATCATATCCTGGCAGAAGCCGGGAACGGAGCCGAAGCTGTAGATCTGGCTAAAAAGTTATCGCCCGACCTGGTGATACTGGATCTGCAACTCTCCAAACTGGATGGCATAAAGGTGACCCGACAGATCCTGGCACACAACGATCATGTCAAAATCATTGCCCTGTCTAATTTTACGATGGAAGACCAGGTAATCGATATGATCAATGCCGGGGTAAAAGGGCTCCTGTTTAAGTCTGACGATAACGACCAAATCCTGAATGCAGTAGAGCAGGTGCTTAAAAACGAAGAATACTTTTGCAAGGGCGCCGTGGAGATCCTGGTTAACCGCTTTGCACGCGGCAATCCCGAAGTGCGCACCCTCATCCATACTTCCGTCTTTTCAAAAAGAGAACTCGATATCATTAAACTGATCTGCAAAGAGAAGACCGCGAAAGAAATCGGGGCCATCCTCTTTATCAGTGAAAAGACCGTAGACTTCCACCGTAAAAAAATTATTGAGAAAATGGAAGTGAAGAATATGATCGGGCTTGTGATCTATGCCATCAAGAATAAGATCGTCAATATTTATGATACCCTGTAG
PROTEIN sequence
Length: 220
MINILVVDHHPIFRLGLKHLLSQVPEYHILAEAGNGAEAVDLAKKLSPDLVILDLQLSKLDGIKVTRQILAHNDHVKIIALSNFTMEDQVIDMINAGVKGLLFKSDDNDQILNAVEQVLKNEEYFCKGAVEILVNRFARGNPEVRTLIHTSVFSKRELDIIKLICKEKTAKEIGAILFISEKTVDFHRKKIIEKMEVKNMIGLVIYAIKNKIVNIYDTL*