ggKbase home page

berkeley_reactor_200306_planktonic_scaffold_26454

Search features with annotation key words

Displaying items 211-240 of 418 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_26454_207
Flavobacterium johnsoniae, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(215674..216438)
DNA (765bp) protein (255aa)
Uncharacterized protein n=1 Tax=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) RepID=A5FEA2_FLAJ1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ06473.1}; TaxID=376686 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101); (Cytophaga johnsonae).;"
berkeley_reactor_200306_planktonic_scaffold_26454_208
Pedobacter sp. BAL39, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(216832..217212)
DNA (381bp) protein (127aa)
Uncharacterized protein n=1 Tax=Pedobacter sp. BAL39 RepID=A6EI73_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:EDM34807.1}; TaxID=391596 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. BAL39.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_26454_209
unknown

Not on your lists

217243..217527
DNA (285bp) protein (95aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_26454_210
RIFCSPLOWO2_12_FULL_Bacteroidetes_37_12_curated, Bacteroidetes, Bacteria

Not on your lists

217524..219977
DNA (2454bp) protein (818aa)
Putative uncharacterized protein id=3898578 bin=GWA2_Bacteroidetes_32_17 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Bacteroidetes_32_17 organism_group=Bacteroidetes
putative photosystem II stability/assembly factor-like protein
Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_37_12_curated
berkeley_reactor_200306_planktonic_scaffold_26454_211
Runella slithyformis, Runella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(220478..222034)
DNA (1557bp) protein (519aa)
Beta-lactamase n=1 Tax=Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 / NCIMB 11436 / LSU 4) RepID=F8EMY7_RUNSL
beta-lactamase
Beta-lactamase {ECO:0000313|EMBL:AEI51637.1}; Flags: Precursor;; TaxID=761193 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Runella.;" source="Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 /; NCIMB 11436 / LSU 4).;"
berkeley_reactor_200306_planktonic_scaffold_26454_212
unknown

Not on your lists

comp(222248..222619)
DNA (372bp) protein (124aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_26454_213
Elizabethkingia anophelis, Elizabethkingia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(222670..223203)
DNA (534bp) protein (178aa)
hypothetical protein n=1 Tax=Pedobacter agri RepID=UPI00029B0951
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIL46485.1}; TaxID=1338011 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Elizabethkingia.;" source="Elizabethkingia anophelis NUHP1.;"
berkeley_reactor_200306_planktonic_scaffold_26454_214
unknown

Not on your lists

comp(223503..223655)
DNA (153bp) protein (51aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_26454_215
Clostridium sp. CAG:470, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(223713..224021)
DNA (309bp) protein (103aa)
thioredoxin n=1 Tax=Myroides injenensis RepID=UPI000288AA12
Thioredoxin {ECO:0000256|PIRNR:PIRNR000077}; TaxID=1262812 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:470.;"
TrxA; thiol-disulfide isomerase and thioredoxins
berkeley_reactor_200306_planktonic_scaffold_26454_216
Pedobacter sp. V48, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(224211..225119)
DNA (909bp) protein (303aa)
FAD-dependent pyridine nucleotide-disulphide oxidoreductase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PTB1_CHIPD
Uncharacterized protein {ECO:0000313|EMBL:ETZ23761.1}; TaxID=509635 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. V48.;"
FAD-dependent pyridine nucleotide-disulfide oxidoreductase
berkeley_reactor_200306_planktonic_scaffold_26454_217
unknown

Not on your lists

225309..226292
DNA (984bp) protein (328aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_26454_218
Pedobacter sp. V48, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

226319..227068
DNA (750bp) protein (250aa)
beta-lactamase (EC:3.5.2.6)
Beta-lactamase n=2 Tax=Flavobacterium johnsoniae RepID=A5FE61_FLAJ1
Uncharacterized protein {ECO:0000313|EMBL:ETZ21715.1}; TaxID=509635 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. V48.;"
berkeley_reactor_200306_planktonic_scaffold_26454_219
Solitalea canadensis, Solitalea, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

227072..227602
DNA (531bp) protein (177aa)
Uncharacterized protein n=1 Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KUN0_SOLCM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFD07454.1}; TaxID=929556 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Solitalea.;" source="Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 /; NCIMB 12057 / USAM 9D) (Flexibacter canadensis).;"
berkeley_reactor_200306_planktonic_scaffold_26454_220
unknown

Not on your lists

227962..228135
DNA (174bp) protein (58aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_26454_221
unknown

Not on your lists

comp(228251..228589)
DNA (339bp) protein (113aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_26454_222
Elizabethkingia meningoseptica, Elizabethkingia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(228603..229547)
DNA (945bp) protein (315aa)
Uncharacterized protein n=1 Tax=Elizabethkingia meningoseptica 502 RepID=T0NRK4_ELIME
Uncharacterized protein {ECO:0000313|EMBL:EQB92775.1}; TaxID=1355388 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Elizabethkingia.;" source="Elizabethkingia meningoseptica 502.;"
ISSpo8 transposase
berkeley_reactor_200306_planktonic_scaffold_26454_223
unknown

Not on your lists

229840..230301
DNA (462bp) protein (154aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_26454_224
unknown

Not on your lists

230320..230649
DNA (330bp) protein (110aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_26454_225
unknown

Not on your lists

comp(230639..230848)
DNA (210bp) protein (70aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_26454_226
unknown

Not on your lists

comp(230918..231052)
DNA (135bp) protein (45aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_26454_227
unknown

Not on your lists

comp(231078..231173)
DNA (96bp) protein (32aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_26454_228
unknown

Not on your lists

231361..231573
DNA (213bp) protein (71aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_26454_229
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(231720..233588)
DNA (1869bp) protein (623aa)
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG n=1 Tax=Niabella soli DSM 19437 RepID=H1NTY2_9SPHI
gidA; tRNA uridine 5-carboxymethylaminomethyl modification protein
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG {ECO:0000256|HAMAP-Rule:MF_00129}; Glucose-inhibited division protein A {ECO:0000256|HAMAP-Rule:MF_00129}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
berkeley_reactor_200306_planktonic_scaffold_26454_230
unknown

Not on your lists

233719..234396
DNA (678bp) protein (226aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_26454_231
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

236329..237381
DNA (1053bp) protein (351aa)
Arginase/agmatinase/formiminoglutamase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PPA9_CHIPD
arginase/agmatinase/formiminoglutamase
Arginase/agmatinase/formiminoglutamase {ECO:0000313|EMBL:ACU60545.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_planktonic_scaffold_26454_232
unknown

Not on your lists

237412..238083
DNA (672bp) protein (224aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_26454_233
GWA2_Nitrospirae_42_11_curated, Nitrospirae, Bacteria

Not on your lists

238241..239296
DNA (1056bp) protein (352aa)
Poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit n=1 Tax=Flexibacter litoralis (strain ATCC 23117 / DSM 6794 / NBRC 15988 / NCIMB 1366 / Sio-4) RepID=I4AJS4_FLELS
poly(R)-hydroxyalkanoic acid synthase subunit PhaC
Tax=GWA2_Nitrospirae_42_11_curated
berkeley_reactor_200306_planktonic_scaffold_26454_234
Paracoccus aminophilus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

239956..241512
DNA (1557bp) protein (519aa)
peptide/nickel transport system, ATP-binding protein (EC:3.6.3.-)
Peptide/nickel transport system, ATP-binding protein {ECO:0000313|EMBL:AGT08550.1}; EC=3.6.3.- {ECO:0000313|EMBL:AGT08550.1};; TaxID=1367847 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus aminophilus JCM 7686.;"
Peptide/nickel transport system, ATP-binding protein n=1 Tax=Paracoccus aminophilus JCM 7686 RepID=S5XYQ0_PARAH
berkeley_reactor_200306_planktonic_scaffold_26454_235
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

241665..242252
DNA (588bp) protein (196aa)
Transcriptional regulator, TetR family n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PQU8_CHIPD
TetR family transcriptional regulator
Transcriptional regulator, TetR family {ECO:0000313|EMBL:ACU60721.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_planktonic_scaffold_26454_236
Chryseobacterium piperi, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

242299..242658
DNA (360bp) protein (120aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI0003716561
Bleomycin resistance protein {ECO:0000313|EMBL:KFF16215.1}; TaxID=558152 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium piperi.;"
bleomycin resistance protein
Displaying items 211-240 of 418 in total

View Taxonomy