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berkeley_reactor_200306_planktonic_scaffold_104042_9

Organism: 2019_SCN_bioreactor_200211_planktonic_Bacteroidetes_50_37

near complete RP 49 / 55 MC: 1 BSCG 50 / 51 ASCG 14 / 38
Location: comp(8976..9485)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Gillisia limnaea DSM 15749 RepID=H2BXE2_9FLAO similarity UNIREF
DB: UNIREF100
  • Identity: 60.8
  • Coverage: 166.0
  • Bit_score: 205
  • Evalue 2.60e-50
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:EHQ02024.1}; TaxID=865937 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Gillisia.;" source="Gillisia limnaea DSM 15749.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 60.8
  • Coverage: 166.0
  • Bit_score: 205
  • Evalue 3.60e-50
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
  • Identity: 58.1
  • Coverage: 167.0
  • Bit_score: 200
  • Evalue 2.30e-49

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Taxonomy

Gillisia limnaea → Gillisia → Flavobacteriales → Flavobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 510
ATGACTGGAACAGCAGAACAGCAGCGGCTCTTCAAAGAGATCATGGAACAGCATCAGGGTATCCTGTTTAAGGTTGCCCGTACGTATTGTCCTGACGAAACCGACCGGCAGGACCTGGTACAGGAAATCAGGATACAGGTCTGGCAATCCCTGCACCGGTATGATGCCCGGTTCCGCATCAGCACCTGGTTGTACCGCATCGCGCTCAATACCGCTATTTCCCATTACCGCCGCCATACCGCACAGGCAAGCCGGTCTGTCGCATGGCAGGACCATGCCGCGCCACCCGCCGACGAGGCACAGGCGGAACAGGAATATAACCTGGTTAAACTGGAACAATTTATAGGGGAACTTGGTGCGATCGACAAAGCGCTGATGTTGCTGTACCTCGAGGATAAAAGTCATGCCGAGATTGCGGAGCTGTTGGGCCTGTCGGTAAGCAATGTAGGCACGAAAATAACACGCATCAGGCAAAAATTAAAAACCCGTTTTGCACAACTCAAATCTTAA
PROTEIN sequence
Length: 170
MTGTAEQQRLFKEIMEQHQGILFKVARTYCPDETDRQDLVQEIRIQVWQSLHRYDARFRISTWLYRIALNTAISHYRRHTAQASRSVAWQDHAAPPADEAQAEQEYNLVKLEQFIGELGAIDKALMLLYLEDKSHAEIAELLGLSVSNVGTKITRIRQKLKTRFAQLKS*