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berkeley_reactor_200306_planktonic_scaffold_104042

Search features with annotation key words

Displaying items 1-30 of 251 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_104042_1
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(1..3057)
DNA (3057bp) protein (1019aa)
hypothetical protein n=1 Tax=Nafulsella turpanensis RepID=UPI000348F941
hypothetical protein
YD repeat protein {ECO:0000313|EMBL:ACU61603.1}; Flags: Precursor;; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_planktonic_scaffold_104042_2
unknown

Not on your lists

4508..5059
DNA (552bp) protein (184aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_104042_3
GWF2_Bacteroidetes_43_11_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

5576..6097
DNA (522bp) protein (174aa)
Thiol-disulfide isomerase-like thioredoxin id=3221866 bin=GWF2_Bacteroidetes_43_11 species=Owenweeksia hongkongensis genus=Owenweeksia taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_43_11 organism_group=Bacteroidetes
thiol-disulfide isomerase-like thioredoxin
Tax=GWF2_Bacteroidetes_43_11_curated
berkeley_reactor_200306_planktonic_scaffold_104042_4
Flavobacterium rivuli, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

6137..6487
DNA (351bp) protein (117aa)
MerP n=1 Tax=Flavobacterium antarcticum RepID=UPI0003B50A61
Uncharacterized protein {ECO:0000313|EMBL:KGO87589.1}; TaxID=1121895 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium rivuli WB 3.3-2 = DSM 21788.;"
heavy metal transport/detoxification protein
berkeley_reactor_200306_planktonic_scaffold_104042_5
unknown

Not on your lists

6653..7096
DNA (444bp) protein (148aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_104042_6
unknown

Not on your lists

7345..7782
DNA (438bp) protein (146aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_104042_7
Sphingobacterium spiritivorum, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

8014..8274
DNA (261bp) protein (87aa)
Uncharacterized protein n=1 Tax=Sphingobacterium spiritivorum ATCC 33861 RepID=D7VQK0_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:EFK56051.1}; TaxID=525373 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium spiritivorum ATCC 33861.;"
berkeley_reactor_200306_planktonic_scaffold_104042_8
Gillisia limnaea, Gillisia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(8315..8971)
DNA (657bp) protein (219aa)
Uncharacterized protein n=1 Tax=Gillisia limnaea DSM 15749 RepID=H2BXE1_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:EHQ02023.1}; TaxID=865937 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Gillisia.;" source="Gillisia limnaea DSM 15749.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_104042_9
Gillisia limnaea, Gillisia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(8976..9485)
DNA (510bp) protein (170aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Gillisia limnaea DSM 15749 RepID=H2BXE2_9FLAO
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:EHQ02024.1}; TaxID=865937 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Gillisia.;" source="Gillisia limnaea DSM 15749.;"
ECF subfamily RNA polymerase sigma-24 subunit
berkeley_reactor_200306_planktonic_scaffold_104042_10
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(9724..10647)
DNA (924bp) protein (308aa)
Putative membrane protein n=1 Tax=Sphingobacterium spiritivorum ATCC 33861 RepID=D7VR07_9SPHI
Putative DMT family transporter {ECO:0000313|EMBL:GAO44142.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_104042_11
Pseudomonas sp. GM18, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11090..12763
DNA (1674bp) protein (558aa)
Uncharacterized protein n=1 Tax=Pseudomonas sp. GM18 RepID=J2NS04_9PSED
Uncharacterized protein {ECO:0000313|EMBL:EJM20336.1}; TaxID=1144324 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. GM18.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_104042_12
Chryseobacterium oranimense, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

12836..13948
DNA (1113bp) protein (371aa)
hypothetical protein n=1 Tax=Empedobacter brevis RepID=UPI000375A6FF
D-alanyl-D-alanine carboxypeptidase {ECO:0000313|EMBL:CEJ68779.1}; Flags: Precursor;; TaxID=1300143 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium oranimense G311.;"
D-alanyl-D-alanine carboxypeptidase
berkeley_reactor_200306_planktonic_scaffold_104042_13
Draconibacterium orientale, Draconibacterium, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

14244..14606
DNA (363bp) protein (121aa)
hypothetical protein n=1 Tax=Nafulsella turpanensis RepID=UPI00034AF530
transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:AHW61005.1}; TaxID=1168034 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prolixibacteraceae; Draconibacterium.;" source="Draconibacterium orientale.;"
berkeley_reactor_200306_planktonic_scaffold_104042_14
Phaeodactylibacter xiamenensis, Phaeodactylibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

14617..16116
DNA (1500bp) protein (500aa)
TonB n=1 Tax=Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482) RepID=Q8A9K2_BACTN
Uncharacterized protein {ECO:0000313|EMBL:KGE87488.1}; TaxID=1524460 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Saprospiraceae; Phaeodactylibacter.;" source="Phaeodactylibacter xiamenensis.;"
TonB
berkeley_reactor_200306_planktonic_scaffold_104042_15
Flavobacterium limnosediminis, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(16369..16794)
DNA (426bp) protein (142aa)
Alcohol dehydrogenase zinc-binding domain protein n=1 Tax=Flavobacterium limnosediminis JC2902 RepID=V6SQY5_9FLAO
Alcohol dehydrogenase zinc-binding domain protein {ECO:0000313|EMBL:ESU28864.1}; TaxID=1341181 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium limnosediminis JC2902.;"
alcohol dehydrogenase
berkeley_reactor_200306_planktonic_scaffold_104042_16
Fibrisoma limi, Fibrisoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(16743..17339)
DNA (597bp) protein (199aa)
Alcohol dehydrogenase {ECO:0000313|EMBL:CCH53608.1}; EC=1.1.1.1 {ECO:0000313|EMBL:CCH53608.1};; TaxID=1185876 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrisoma.;" source="Fibrisoma limi BUZ 3.;"
Alcohol dehydrogenase n=1 Tax=Fibrisoma limi BUZ 3 RepID=I2GI83_9BACT
NADPH:quinone reductase and related Zn-dependent oxidoreductase
berkeley_reactor_200306_planktonic_scaffold_104042_17
Pedobacter sp. V48, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

17658..19961
DNA (2304bp) protein (768aa)
Catalase-peroxidase {ECO:0000256|HAMAP-Rule:MF_01961, ECO:0000256|RuleBase:RU003451}; Short=CP {ECO:0000256|HAMAP-Rule:MF_01961};; EC=1.11.1.21 {ECO:0000256|HAMAP-Rule:MF_01961, ECO:0000256|RuleBase:RU003451};; Peroxidase/catalase {ECO:0000256|HAMAP-Rule:MF_01961}; TaxID=509635 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. V48.;"
Catalase-peroxidase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TPG8_NIAKG
catalase
berkeley_reactor_200306_planktonic_scaffold_104042_18
unknown

Not on your lists

comp(20069..21676)
DNA (1608bp) protein (536aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_104042_19
Epilithonimonas sp. FH1, Epilithonimonas, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(21839..22597)
DNA (759bp) protein (253aa)
hypothetical protein n=1 Tax=Lewinella persica RepID=UPI00038215A6
Uncharacterized protein {ECO:0000313|EMBL:KFC19669.1}; TaxID=1233951 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Epilithonimonas.;" source="Epilithonimonas sp. FH1.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_104042_20
unknown

Not on your lists

23698..23895
DNA (198bp) protein (66aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_104042_21
Fibrella aestuarina, Fibrella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

23979..25055
DNA (1077bp) protein (359aa)
Sensor protein lytS n=1 Tax=Fibrella aestuarina BUZ 2 RepID=I0K5D1_9BACT
Sensor protein lytS
Sensor protein lytS {ECO:0000313|EMBL:CCG99334.1}; TaxID=1166018 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrella.;" source="Fibrella aestuarina BUZ 2.;"
berkeley_reactor_200306_planktonic_scaffold_104042_22
Echinicola vietnamensis, Echinicola, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

25121..25612
DNA (492bp) protein (164aa)
Uncharacterized protein n=1 Tax=Echinicola vietnamensis (strain DSM 17526 / LMG 23754 / KMM 6221) RepID=L0FYV0_ECHVK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA77820.1}; Flags: Precursor;; TaxID=926556 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Echinicola.;" source="Echinicola vietnamensis (strain DSM 17526 / LMG 23754 / KMM 6221).;"
berkeley_reactor_200306_planktonic_scaffold_104042_23
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

25862..28291
DNA (2430bp) protein (810aa)
TonB-dependent siderophore receptor n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6W3C0_DYAFD
TonB-dependent siderophore receptor
TonB-dependent siderophore receptor {ECO:0000313|EMBL:ACT92224.1}; Flags: Precursor;; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
berkeley_reactor_200306_planktonic_scaffold_104042_24
Flavobacterium sp. 316, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(28927..30663)
DNA (1737bp) protein (579aa)
hypothetical protein n=1 Tax=Echinicola pacifica RepID=UPI0003700B9A
Uncharacterized protein {ECO:0000313|EMBL:KIX22057.1}; TaxID=1603293 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. 316.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_104042_25
Hymenobacter swuensis, Hymenobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(30870..31961)
DNA (1092bp) protein (364aa)
Polymorphic outer membrane protein n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VZM6_DYAFD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHJ96876.1}; TaxID=1227739 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Hymenobacter.;" source="Hymenobacter swuensis DY53.;"
berkeley_reactor_200306_planktonic_scaffold_104042_26
Solitalea canadensis, Solitalea, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(32135..32620)
DNA (486bp) protein (162aa)
DinB family protein n=1 Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KTB3_SOLCM
DinB family protein
DinB family protein {ECO:0000313|EMBL:AFD06250.1}; TaxID=929556 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Solitalea.;" source="Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 /; NCIMB 12057 / USAM 9D) (Flexibacter canadensis).;"
berkeley_reactor_200306_planktonic_scaffold_104042_27
Flavobacterium sp. F52, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

32729..33316
DNA (588bp) protein (196aa)
TetR family transcriptional regulator n=1 Tax=Flavobacterium sp. F52 RepID=J1KMZ8_9FLAO
TetR family transcriptional regulator {ECO:0000313|EMBL:EJF99155.1}; TaxID=1202532 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. F52.;"
TetR family transcriptional regulator
berkeley_reactor_200306_planktonic_scaffold_104042_28
Pedobacter sp. NL19, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

33381..34229
DNA (849bp) protein (283aa)
hypothetical protein n=1 Tax=Scytonema hofmanni RepID=UPI00034B6343
Contig34, whole genome shotgun sequence {ECO:0000313|EMBL:KIO77436.1}; TaxID=1503925 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. NL19.;"
short-chain dehydrogenase/reductase SDR
berkeley_reactor_200306_planktonic_scaffold_104042_29
Neisseria mucosa, Neisseria, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34431..35153
DNA (723bp) protein (241aa)
tRNA pseudouridine synthase A (EC:4.2.1.70)
Pseudouridylate synthase n=1 Tax=Neisseria mucosa ATCC 25996 RepID=D2ZZ08_NEIMU
Pseudouridylate synthase {ECO:0000313|EMBL:EFC87652.1}; TaxID=546266 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria.;" source="Neisseria mucosa ATCC 25996.;"
berkeley_reactor_200306_planktonic_scaffold_104042_30
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

35232..36008
DNA (777bp) protein (259aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TAJ3_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEV98155.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Displaying items 1-30 of 251 in total

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