ggKbase home page

berkeley_reactor_200306_planktonic_scaffold_104042_34

Organism: 2019_SCN_bioreactor_200211_planktonic_Bacteroidetes_50_37

near complete RP 49 / 55 MC: 1 BSCG 50 / 51 ASCG 14 / 38
Location: 40053..40697

Top 3 Functional Annotations

Value Algorithm Source
Collagenase n=1 Tax=Arcticibacter svalbardensis MN12-7 RepID=R9GUD8_9SPHI similarity UNIREF
DB: UNIREF100
  • Identity: 57.6
  • Coverage: 210.0
  • Bit_score: 256
  • Evalue 1.60e-65
Collagenase {ECO:0000313|EMBL:EOR95472.1}; TaxID=1150600 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Arcticibacter.;" source="Arcticibacter svalbardensis MN12-7.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 57.6
  • Coverage: 210.0
  • Bit_score: 256
  • Evalue 2.30e-65
lipid-binding START domain-containing protein similarity KEGG
DB: KEGG
  • Identity: 45.1
  • Coverage: 206.0
  • Bit_score: 204
  • Evalue 1.60e-50

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Arcticibacter svalbardensis → Arcticibacter → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 645
ATGTACCGTTTCCTCCTTTATCTCCTCCTGTTTTTTAGCCTGGCCACCGGGGCGTTTGCCCAGTCCGGCTGGAAATTCCTTACTGAAAAACAAGGTATTAAAGTTTATTCCCAGCCGGTAGCCGGTTCCAAGGTAAAGGCCCTGCGGGTGGAATGTGTGCTTAATACCACCGCTTCGGCACTGGTAACCTTACTGCTCGATGTGCCCGCGGCAGAAGAATGGGTATCGCATACTAAATCCTGTGTCCTGCTGAAACAGGTATCTCCCGCTGAGTTATACTATTATTCCGAAGTAAAACTGCCCTGGCCGTTGGAGAACCGCGATTTTGTGGCGCATGTCAAAGTAACGCAGGATAAGGCTTCCGGCACGGTAACCGTTCATGCCCCGGCTATTCCCGGTTGGGTAGCCGATAAAAAAGGCATTGTAAGGGTCAATCATTCCATCGGTTTATGGACCATCCGCATCCTTGACAAAAGCAGGGTAAGCGTAAGTTATAGCCTGCAGGTAGATCCCGGCGGTATGATCCCCGCCTGGGCCGTCAATGCACTCTCCTCACAGGGACCGATCGACAGTTTTATCAAAATGAAGGAAAAACTGCAGCAGCCGCGTTATAAAAACGCGGTGCTGGATTTTATCGAAGGCTAA
PROTEIN sequence
Length: 215
MYRFLLYLLLFFSLATGAFAQSGWKFLTEKQGIKVYSQPVAGSKVKALRVECVLNTTASALVTLLLDVPAAEEWVSHTKSCVLLKQVSPAELYYYSEVKLPWPLENRDFVAHVKVTQDKASGTVTVHAPAIPGWVADKKGIVRVNHSIGLWTIRILDKSRVSVSYSLQVDPGGMIPAWAVNALSSQGPIDSFIKMKEKLQQPRYKNAVLDFIEG*