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berkeley_reactor_200306_planktonic_scaffold_107672_2

Organism: 2019_SCN_bioreactor_200211_planktonic_Bacteroidetes_50_37

near complete RP 49 / 55 MC: 1 BSCG 50 / 51 ASCG 14 / 38
Location: 513..1259

Top 3 Functional Annotations

Value Algorithm Source
Two component transcriptional regulator, LytTR family n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PMC2_CHIPD similarity UNIREF
DB: UNIREF100
  • Identity: 42.9
  • Coverage: 254.0
  • Bit_score: 219
  • Evalue 3.30e-54
LytTR family two component transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 44.9
  • Coverage: 243.0
  • Bit_score: 219
  • Evalue 9.30e-55
Two component transcriptional regulator, LytTR family {ECO:0000313|EMBL:AEV99344.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 44.9
  • Coverage: 243.0
  • Bit_score: 219
  • Evalue 4.60e-54

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Taxonomy

Niastella koreensis → Niastella → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 747
ATGATCAAGACCCTAATTATCGACGACGACCAGGCCAACATCAACACCCTGCAAAAAATGCTTAACCTGTACTGTCCGCAGATCAATCCCTGTGGCACGGCTACGAATATCAGCGATGCGTATGACCTTATCCGGGAAACGCAACCCGCGCTGATCTTCCTGGATATCGAAATGCCCAACGGGAACGGCTTCGACCTGCTGCGAAAGTTTGAACGCATCAACTTTGACGTCGTTTTCACGACGGCTTACGACCAGTATGCGCTGGAAGCCTTGCGCAGGGAAGCACTCGATTACCTGCTCAAACCCATTGATATAGATGCCCTGCAGCAAGCCGTATTGAAAGCCGAGAAAAAAGCTAAGCTGCCACAGGGCAATACCTATTGGGAAAAGGTGCTCCAGGGGCTGAACCTGGTGGCCAACAACAAGATTTGTATCCCGGTAATGGACGGTATGCTCTTTGTGAATCCCAAGGAGATTGTACGCTGCGAGGCAAGCGGCAGCTACAGTAATTTTTTTATGGTAAACGGTAAAAAACTGACCACCAGTCTTCGGCTGAAAGAATGCGAAGAGCTGCTGCCGGAACAGTATTTTTTCCGGACCCATCATTCCCATATCATCAACCTCAATTACATGAGTCGTTATGTAAAAGGCAGGGGCGGTTATATCGTAATGGAAGACAACAGTATGGTAGAACTCGCCACGCGTAAGAAAGATGCCTTTATGGATTTTGTAAAGAAAAGGTATTGA
PROTEIN sequence
Length: 249
MIKTLIIDDDQANINTLQKMLNLYCPQINPCGTATNISDAYDLIRETQPALIFLDIEMPNGNGFDLLRKFERINFDVVFTTAYDQYALEALRREALDYLLKPIDIDALQQAVLKAEKKAKLPQGNTYWEKVLQGLNLVANNKICIPVMDGMLFVNPKEIVRCEASGSYSNFFMVNGKKLTTSLRLKECEELLPEQYFFRTHHSHIINLNYMSRYVKGRGGYIVMEDNSMVELATRKKDAFMDFVKKRY*