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berkeley_reactor_200306_planktonic_scaffold_123701_12

Organism: 2019_SCN_bioreactor_200211_planktonic_Bacteroidetes_50_37

near complete RP 49 / 55 MC: 1 BSCG 50 / 51 ASCG 14 / 38
Location: 14537..15394

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma 70 subunit, RpoD subfamily n=1 Tax=Niabella soli DSM 19437 RepID=H1NPV4_9SPHI similarity UNIREF
DB: UNIREF100
  • Identity: 89.5
  • Coverage: 285.0
  • Bit_score: 503
  • Evalue 1.30e-139
RNA polymerase sigma factor rpoD similarity KEGG
DB: KEGG
  • Identity: 89.5
  • Coverage: 285.0
  • Bit_score: 503
  • Evalue 3.70e-140
RNA polymerase sigma factor rpoD {ECO:0000313|EMBL:AHF14910.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 89.5
  • Coverage: 285.0
  • Bit_score: 503
  • Evalue 1.80e-139

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Taxonomy

Niabella soli → Niabella → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 858
ATGAGGCAACTCAAAATTGCAACTCAGATTACGAACCGCGATTCGCAGGCCGTAGAGAAATATCTACAGGAGATCAGCCGTATTTCGATGATCACTCCTGAAGAAGAGACTACGCTTGCTCAGAAGATTCATGTGGGAGATCAGCGGGCACTGGAGAAACTGGTAAAAGCCAATCTTCGTTTCGTAGTATCTGTGGCTAAGCAATACCAGCACCAGGGATTGTCGCTGAGTGATCTGATTAATGAGGGTAACCTGGGCTTGATCAAGGCCGCACAGCGTTTTGATGAAACCAAGGGTTTTAAATTTATCTCTTATGCCGTATGGTGGATCCGTCAGTCTATCCTGCAGGCACTGGCAGAACAAGGCCGTTTGGTACGTCTGCCGCAAAATAAGATCGGCACCTATAATAAAGCCAACAAGGCCTATATCGCATTCGAACAAGAGCACGAAAGGGAACCGTCTACCGAAGAACTGGCCAGCATCCTGGAAATGAGCGAAACCGAAATCGCCAATATTTTCAGCAGCAACACCCGCCACACTTCGCTTGATGCTCCCGTACACGAAGCGGAAGACGTAGCGATGGGCGACCTGCTGGAAGGCAGCAACGATACCGATGATACGGTGATGAAAGACTCCCTGAAAGCAGAGATCCAACGCATCCTGAAATCGCTGAGCGTTCGCGAAGCTGAGATCATCTCTGCCTATTTCGGGCTTGAAGGCGATAGCGGTCCGTCGGTAGAAGAAATTGGCCAGAAATACGACCTGACCAAAGAGCGTATCCGCCAGATCAAAGAGCGCGCTATCAAACGCCTGCAAAAGGCCAGGTACAGCGGCTCGCTGAAATCTTACTTAGGCTAA
PROTEIN sequence
Length: 286
MRQLKIATQITNRDSQAVEKYLQEISRISMITPEEETTLAQKIHVGDQRALEKLVKANLRFVVSVAKQYQHQGLSLSDLINEGNLGLIKAAQRFDETKGFKFISYAVWWIRQSILQALAEQGRLVRLPQNKIGTYNKANKAYIAFEQEHEREPSTEELASILEMSETEIANIFSSNTRHTSLDAPVHEAEDVAMGDLLEGSNDTDDTVMKDSLKAEIQRILKSLSVREAEIISAYFGLEGDSGPSVEEIGQKYDLTKERIRQIKERAIKRLQKARYSGSLKSYLG*