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berkeley_reactor_200306_planktonic_scaffold_123701

Search features with annotation key words

Displaying items 1-30 of 353 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_123701_1
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(1..3048)
DNA (3048bp) protein (1016aa)
YD repeat protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) PF98_CHIPD">RepID=C7PF98_CHIPD
hypothetical protein
YD repeat protein {ECO:0000313|EMBL:ACU61603.1}; Flags: Precursor;; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_planktonic_scaffold_123701_2
unknown

Not on your lists

comp(3160..4500)
DNA (1341bp) protein (447aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_123701_3
Chryseobacterium indologenes, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(4688..5950)
DNA (1263bp) protein (421aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI0003753B37
Uncharacterized protein {ECO:0000313|EMBL:GAE63673.1}; TaxID=1218103 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium indologenes NBRC 14944.;"
membrane protein
berkeley_reactor_200306_planktonic_scaffold_123701_4
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(6035..7135)
DNA (1101bp) protein (367aa)
Glycosyltransferase 28 domain n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VVM4_DYAFD
glycosyl transferase family protein
Glycosyltransferase 28 domain {ECO:0000313|EMBL:ACT96754.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
berkeley_reactor_200306_planktonic_scaffold_123701_5
unknown

Not on your lists

7375..7620
DNA (246bp) protein (82aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_123701_6
GWF2_Bacteroidetes_43_11_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

7732..10158
DNA (2427bp) protein (809aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00037FDA53
TonB-dependent receptor
Tax=GWF2_Bacteroidetes_43_11_curated
berkeley_reactor_200306_planktonic_scaffold_123701_7
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

10597..11043
DNA (447bp) protein (149aa)
Heat shock protein Hsp20 n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PI65_CHIPD
heat shock protein Hsp20
Heat shock protein Hsp20 {ECO:0000313|EMBL:ACU63627.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_planktonic_scaffold_123701_8
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

11283..11834
DNA (552bp) protein (184aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TCI1_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEW02521.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
berkeley_reactor_200306_planktonic_scaffold_123701_9
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

12096..12647
DNA (552bp) protein (184aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TCI1_NIAKG
Uncharacterized protein {ECO:0000313|EMBL:KIC96423.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_123701_10
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(12903..14081)
DNA (1179bp) protein (393aa)
acyl-CoA dehydrogenase domain-containing protein (EC:1.3.99.7)
acyl-CoA dehydrogenase n=1 Tax=Segetibacter koreensis RepID=UPI0003656A3F
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
berkeley_reactor_200306_planktonic_scaffold_123701_11
unknown

Not on your lists

14341..14451
DNA (111bp) protein (37aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_123701_12
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

14537..15394
DNA (858bp) protein (286aa)
RNA polymerase, sigma 70 subunit, RpoD subfamily n=1 Tax=Niabella soli DSM 19437 RepID=H1NPV4_9SPHI
RNA polymerase sigma factor rpoD
RNA polymerase sigma factor rpoD {ECO:0000313|EMBL:AHF14910.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
berkeley_reactor_200306_planktonic_scaffold_123701_13
Chryseobacterium sp. P1-3, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

16024..17595
DNA (1572bp) protein (524aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00037C9C92
Uncharacterized protein {ECO:0000313|EMBL:KFF74217.1}; TaxID=1517683 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium sp. P1-3.;"
fibronectin type III domain-containing protein
berkeley_reactor_200306_planktonic_scaffold_123701_14
Chryseobacterium sp. P1-3, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

17844..19397
DNA (1554bp) protein (518aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00037C9C92
Uncharacterized protein {ECO:0000313|EMBL:KFF74217.1}; TaxID=1517683 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium sp. P1-3.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_123701_15
Chryseobacterium sp. P1-3, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

20071..21588
DNA (1518bp) protein (506aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00037C9C92
Uncharacterized protein {ECO:0000313|EMBL:KFF74217.1}; TaxID=1517683 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium sp. P1-3.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_123701_16
unknown

Not on your lists

22014..23525
DNA (1512bp) protein (504aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_123701_17
unknown

Not on your lists

23699..24055
DNA (357bp) protein (119aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_123701_18
Pseudomonas sp. CF161, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24152..24478
DNA (327bp) protein (109aa)
Uncharacterized protein n=1 Tax=Pseudomonas sp. CF161 RepID=S6INR6_9PSED
Uncharacterized protein {ECO:0000313|EMBL:EPL03274.1}; TaxID=911241 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. CF161.;"
berkeley_reactor_200306_planktonic_scaffold_123701_19
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(24483..25235)
DNA (753bp) protein (251aa)
Uncharacterized protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NQ54_9SPHI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHF16359.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
berkeley_reactor_200306_planktonic_scaffold_123701_20
unknown

Not on your lists

25510..25953
DNA (444bp) protein (148aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_123701_21
Bacillus ginsengihumi, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

26012..26776
DNA (765bp) protein (255aa)
Uncharacterized protein n=1 Tax=Paenibacillus barengoltzii G22 RepID=R9LCE4_9BACL
Ubiquinone biosynthesis protein {ECO:0000313|EMBL:KHD86239.1}; TaxID=363870 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus ginsengihumi.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_123701_22
Arcticibacter svalbardensis, Arcticibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(26782..27324)
DNA (543bp) protein (181aa)
Uncharacterized protein n=1 Tax=Arcticibacter svalbardensis MN12-7 RepID=R9GVV9_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:EOR95803.1}; TaxID=1150600 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Arcticibacter.;" source="Arcticibacter svalbardensis MN12-7.;"
metal-dependent hydrolase
berkeley_reactor_200306_planktonic_scaffold_123701_23
Chryseobacterium piperi, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

27508..28956
DNA (1449bp) protein (483aa)
Por secretion system C-terminal sorting domain containing protein n=1 Tax=Chryseobacterium sp. CF314 RepID=J3CNM6_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:KFF28711.1}; TaxID=558152 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium piperi.;"
Collagen triple helix repeat-containing protein
berkeley_reactor_200306_planktonic_scaffold_123701_24
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(29033..30358)
DNA (1326bp) protein (442aa)
Adenosylhomocysteinase {ECO:0000256|HAMAP-Rule:MF_00563, ECO:0000256|RuleBase:RU000548}; EC=3.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00563, ECO:0000256|RuleBase:RU000548};; S-adenosyl-L-homocysteine hydrolase {ECO:0000256|HAMAP-Rule:MF_00563}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Adenosylhomocysteinase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TIZ6_NIAKG
adenosylhomocysteinase
berkeley_reactor_200306_planktonic_scaffold_123701_25
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

30478..30969
DNA (492bp) protein (164aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00037BC515
AsnC family transcriptional regulator
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
berkeley_reactor_200306_planktonic_scaffold_123701_26
unknown

Not on your lists

comp(31243..31452)
DNA (210bp) protein (70aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_123701_27
Cellulophaga geojensis, Cellulophaga, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(31556..31747)
DNA (192bp) protein (64aa)
cold-shock protein n=1 Tax=Dyadobacter beijingensis RepID=UPI00036BAB1B
cold-shock protein
Cold-shock DNA-binding domain-containing protein {ECO:0000313|EMBL:EWH15097.1}; TaxID=1328323 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Cellulophaga.;" source="Cellulophaga geojensis KL-A.;"
berkeley_reactor_200306_planktonic_scaffold_123701_28
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(31924..32940)
DNA (1017bp) protein (339aa)
Uncharacterized protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NMM5_9SPHI
hypothetical protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
berkeley_reactor_200306_planktonic_scaffold_123701_29
unknown

Not on your lists

comp(33214..33354)
DNA (141bp) protein (47aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_123701_30
GWF2_Planctomycetes_41_51_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

33407..34681
DNA (1275bp) protein (425aa)
hypothetical protein n=1 Tax=Cytophaga aurantiaca RepID=UPI000361C635
hypothetical protein
Tax=GWF2_Planctomycetes_41_51_curated
Displaying items 1-30 of 353 in total

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