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berkeley_reactor_200306_planktonic_scaffold_123701

Search features with annotation key words

Displaying items 121-150 of 353 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_123701_117
Chryseobacterium sp. StRB126, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

134337..136037
DNA (1701bp) protein (567aa)
hypothetical protein n=1 Tax=Empedobacter brevis RepID=UPI000373F276
siderophore biosynthesis protein
Siderophore biosynthesis protein {ECO:0000313|EMBL:BAP29893.1}; TaxID=878220 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium sp. StRB126.;"
berkeley_reactor_200306_planktonic_scaffold_123701_118
Chryseobacterium sp. StRB126, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

136042..137373
DNA (1332bp) protein (444aa)
hypothetical protein n=1 Tax=Empedobacter brevis RepID=UPI00037898D2
alcaligin biosynthesis enzyme
Alcaligin biosynthesis enzyme {ECO:0000313|EMBL:BAP29894.1}; TaxID=878220 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium sp. StRB126.;"
berkeley_reactor_200306_planktonic_scaffold_123701_119
Pseudoalteromonas ruthenica, Pseudoalteromonas, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

137354..138448
DNA (1095bp) protein (365aa)
hypothetical protein n=1 Tax=Empedobacter brevis RepID=UPI00035F17AF
Uncharacterized protein {ECO:0000313|EMBL:KJZ02137.1}; TaxID=151081 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Pseudoalteromonadaceae; Pseudoalteromonas.;" source="Pseudoalteromonas ruthenica.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_123701_120
unknown

Not on your lists

138518..138922
DNA (405bp) protein (135aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI000377EE86
berkeley_reactor_200306_planktonic_scaffold_123701_121
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(138982..140040)
DNA (1059bp) protein (353aa)
fbaB; putative fructose-bisphosphate aldolase class I (EC:4.1.2.13)
Deoxyribose-phosphate aldolase n=3 Tax=Bacteroides RepID=E4VYY0_BACFG
Deoxyribose-phosphate aldolase {ECO:0000313|EMBL:EFR54664.1}; TaxID=457424 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis 3_1_12.;"
berkeley_reactor_200306_planktonic_scaffold_123701_trna_1
unknown

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140213..140286
DNA (74bp)
transferRNA Met
berkeley_reactor_200306_planktonic_scaffold_123701_122
unknown

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comp(140401..140583)
DNA (183bp) protein (61aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_123701_123
Chryseobacterium formosense, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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comp(140808..141860)
DNA (1053bp) protein (351aa)
hypothetical protein n=1 Tax=Hymenobacter norwichensis RepID=UPI0003B460DC
Uncharacterized protein {ECO:0000313|EMBL:KFE99573.1}; TaxID=236814 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium formosense.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_123701_124
unknown

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142657..142911
DNA (255bp) protein (85aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_123701_125
unknown

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comp(144056..144496)
DNA (441bp) protein (147aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_123701_126
unknown

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comp(144946..145137)
DNA (192bp) protein (64aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_123701_127
unknown

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145441..146094
DNA (654bp) protein (218aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_123701_128
Pedobacter sp. V48, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

146188..146958
DNA (771bp) protein (257aa)
methyltransferase n=1 Tax=Cytophagales str. B6 RepID=UPI0003B33BBC
Uncharacterized protein {ECO:0000313|EMBL:ETZ21639.1}; TaxID=509635 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. V48.;"
methyltransferase
berkeley_reactor_200306_planktonic_scaffold_123701_129
unknown

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148687..149232
DNA (546bp) protein (182aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_123701_130
Pedobacter kyungheensis, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

149614..150009
DNA (396bp) protein (132aa)
transcriptional regulator n=1 Tax=Pedobacter agri RepID=UPI000299E277
Transcriptional regulator {ECO:0000313|EMBL:KIA94095.1}; TaxID=1069985 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter kyungheensis.;"
CopY family transcriptional repressor
berkeley_reactor_200306_planktonic_scaffold_123701_131
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

150023..151528
DNA (1506bp) protein (502aa)
Peptidase M56 BlaR1 n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PS66_CHIPD
peptidase M56 BlaR1
Peptidase M56 BlaR1 {ECO:0000313|EMBL:ACU62630.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_planktonic_scaffold_123701_132
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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151606..154050
DNA (2445bp) protein (815aa)
TonB-dependent receptor plug n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1Y7R2_9SPHI
TonB-dependent receptor plug {ECO:0000313|EMBL:EHQ29907.1}; Flags: Precursor;; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
TonB-dependent receptor plug
berkeley_reactor_200306_planktonic_scaffold_123701_133
Nematostella vectensis, Nematostella, Actiniaria, Hexacorallia, Cnidaria, Metazoa

Not on your lists

154253..155389
DNA (1137bp) protein (379aa)
Predicted protein (Fragment) n=1 Tax=Nematostella vectensis RepID=A7TCA5_NEMVE
Predicted protein {ECO:0000313|EMBL:EDO26329.1}; Flags: Fragment;; TaxID=45351 species="Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; Edwardsiidae; Nematostella.;" source="Nematostella vectensis (Starlet sea anemone).;"
arginase/agmatinase/formiminoglutamase
berkeley_reactor_200306_planktonic_scaffold_123701_134
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(156105..157826)
DNA (1722bp) protein (574aa)
Peptidase C45 acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase n=1 Tax=Niabella soli DSM 19437 RepID=H1NRE1_9SPHI
peptidase C45
Peptidase C45 {ECO:0000313|EMBL:AHF16541.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
berkeley_reactor_200306_planktonic_scaffold_123701_135
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

157953..159323
DNA (1371bp) protein (457aa)
DEAD/DEAH box helicase domain protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PJ03_CHIPD
DEAD/DEAH box helicase
DEAD/DEAH box helicase domain protein {ECO:0000313|EMBL:ACU60087.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_planktonic_scaffold_123701_136
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(159406..160827)
DNA (1422bp) protein (474aa)
Pyruvate kinase {ECO:0000256|RuleBase:RU000504}; EC=2.7.1.40 {ECO:0000256|RuleBase:RU000504};; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Pyruvate kinase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TGD6_NIAKG
pyruvate kinase
berkeley_reactor_200306_planktonic_scaffold_123701_137
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

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comp(160933..161832)
DNA (900bp) protein (300aa)
sugar kinase n=1 Tax=Segetibacter koreensis RepID=UPI000361A34E
PfkB domain-containing protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
berkeley_reactor_200306_planktonic_scaffold_123701_138
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(161982..162977)
DNA (996bp) protein (332aa)
PfkB domain protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T7D2_NIAKG
PfkB domain-containing protein
PfkB domain protein {ECO:0000313|EMBL:AEW01168.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
berkeley_reactor_200306_planktonic_scaffold_123701_139
Runella slithyformis, Runella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(163008..163475)
DNA (468bp) protein (156aa)
hypothetical protein n=1 Tax=Rudanella lutea RepID=UPI000373A840
TonB family protein
TonB family protein {ECO:0000313|EMBL:AEI47598.1}; Flags: Precursor;; TaxID=761193 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Runella.;" source="Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 /; NCIMB 11436 / LSU 4).;"
berkeley_reactor_200306_planktonic_scaffold_123701_140
BJP_IG2103_Bacteroidetes_37_22, Bacteroidetes, Bacteria

Not on your lists

comp(163602..163997)
DNA (396bp) protein (132aa)
TonB family protein n=1 Tax=Emticicia oligotrophica (strain DSM 17448 / GPTSA100-15) RepID=I2EYI1_EMTOG
TonB family protein
Tax=BJP_IG2103_Bacteroidetes_37_22
berkeley_reactor_200306_planktonic_scaffold_123701_141
Bacteroides eggerthii, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(164019..164444)
DNA (426bp) protein (142aa)
TonB family domain-containing protein n=1 Tax=Bacteroides eggerthii 1_2_48FAA RepID=E5WY06_9BACE
TonB family domain-containing protein {ECO:0000313|EMBL:EFV30235.1}; TaxID=665953 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides eggerthii 1_2_48FAA.;"
TonB family protein
berkeley_reactor_200306_planktonic_scaffold_123701_142
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(164544..166187)
DNA (1644bp) protein (548aa)
Adenine deaminase {ECO:0000256|HAMAP-Rule:MF_01518, ECO:0000256|SAAS:SAAS00006067}; Short=Adenase {ECO:0000256|HAMAP-Rule:MF_01518};; Short=Adenine aminase {ECO:0000256|HAMAP-Rule:MF_01518};; EC=3.5.4.2 {ECO:0000256|HAMAP-Rule:MF_01518, ECO:0000256|SAAS:SAAS00006067};; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
Adenine deaminase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PNZ9_CHIPD
adenine deaminase
berkeley_reactor_200306_planktonic_scaffold_123701_143
RBG_16_RIF_CHLX_72_14_curated, RIF-CHLX, Bacteria

Not on your lists

comp(166206..166670)
DNA (465bp) protein (155aa)
Methylglyoxal synthase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TCH2_NIAKG
Methylglyoxal synthase
Tax=RBG_16_RIF_CHLX_72_14_curated
berkeley_reactor_200306_planktonic_scaffold_123701_144
Hymenobacter swuensis, Hymenobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(166710..167252)
DNA (543bp) protein (181aa)
TetR family transcriptional regulator n=1 Tax=Hymenobacter norwichensis RepID=UPI0003B4674C
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHJ96680.1}; TaxID=1227739 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Hymenobacter.;" source="Hymenobacter swuensis DY53.;"
berkeley_reactor_200306_planktonic_scaffold_123701_145
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(167359..169308)
DNA (1950bp) protein (650aa)
DNA primase {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811}; EC=2.7.7.- {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811};; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
DNA primase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PKU5_CHIPD
DNA primase
Displaying items 121-150 of 353 in total

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