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berkeley_reactor_200306_planktonic_scaffold_131577_4

Organism: 2019_SCN_bioreactor_200211_planktonic_Bacteroidetes_50_37

near complete RP 49 / 55 MC: 1 BSCG 50 / 51 ASCG 14 / 38
Location: comp(3213..3773)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TMT1_NIAKG similarity UNIREF
DB: UNIREF100
  • Identity: 72.6
  • Coverage: 175.0
  • Bit_score: 268
  • Evalue 2.70e-69
RNA polymerase sigma factor {ECO:0000313|EMBL:KIC94670.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 71.9
  • Coverage: 178.0
  • Bit_score: 269
  • Evalue 2.90e-69
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
  • Identity: 72.6
  • Coverage: 175.0
  • Bit_score: 268
  • Evalue 7.70e-70

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Taxonomy

Flavihumibacter solisilvae → Flavihumibacter → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 561
ATGGCGCAGCCGCTACTGCCAAACGACGATAATGAACTGTTACATGCCTTCCGGGACGAAAGTACCCGGGAAGCCGCCTATACCAAGATTATCCGCAAATACCAGGAAAAACTGTATTGGCATATCCGCCGCATGGTAGTGAACCACGACGATGCCAACGATGTATTACAAAATACGTTTATCAAAGTGTGGAACTACCTGGATAATTTCCGGGAAGAAGCCAACCTGTATACCTGGATGTACCGGATCGCTACCAACGAGACGCTGACCTTTCTCGACAAGGAAAAACGCAGAGCCTCCTTATCGCTTTCAGACCACGAAAGCAATCTTGCCAATAAACTGCAATCCGAAAAAGGCTTCGATGCCAATAAGCTGGAATGGAAGCTGCAACAGGCTATACAGAGCCTGCCGGAAAAACAGCGTACGGTATTCCTGCTCCGGTACTACGACGAAATGCCTTATGAAGAAATGTCGATAGCCCTCGAAACCTCGACGGGCGCACTAAAGGCTTCGTACCATCATGCAGTCAAAAAAGTAGAGGAATTTTTAAAGCGCGATTAA
PROTEIN sequence
Length: 187
MAQPLLPNDDNELLHAFRDESTREAAYTKIIRKYQEKLYWHIRRMVVNHDDANDVLQNTFIKVWNYLDNFREEANLYTWMYRIATNETLTFLDKEKRRASLSLSDHESNLANKLQSEKGFDANKLEWKLQQAIQSLPEKQRTVFLLRYYDEMPYEEMSIALETSTGALKASYHHAVKKVEEFLKRD*