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berkeley_reactor_200306_planktonic_scaffold_131577

Search features with annotation key words

Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_131577_1
Pedobacter kyungheensis, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(1..1602)
DNA (1602bp) protein (534aa)
PDK repeat-containing protein n=1 Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KPG3_SOLCM
Uncharacterized protein {ECO:0000313|EMBL:KIA93374.1}; TaxID=1069985 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter kyungheensis.;"
PDK repeat-containing protein
berkeley_reactor_200306_planktonic_scaffold_131577_2
unknown

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comp(1901..2329)
DNA (429bp) protein (143aa)
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_131577_3
unknown

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comp(2352..3179)
DNA (828bp) protein (276aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_131577_4
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(3213..3773)
DNA (561bp) protein (187aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TMT1_NIAKG
RNA polymerase sigma factor {ECO:0000313|EMBL:KIC94670.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
ECF subfamily RNA polymerase sigma-24 subunit
berkeley_reactor_200306_planktonic_scaffold_131577_5
Pedobacter kyungheensis, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

3923..4855
DNA (933bp) protein (311aa)
Methionyl-tRNA formyltransferase {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00043681}; EC=2.1.2.9 {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00150580};; TaxID=1069985 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter kyungheensis.;"
Methionyl-tRNA formyltransferase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TL01_NIAKG
methionyl-tRNA formyltransferase
berkeley_reactor_200306_planktonic_scaffold_131577_6
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(4913..5605)
DNA (693bp) protein (231aa)
Methyltransferase type 11 n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1YH47_9SPHI
Methyltransferase type 11 {ECO:0000313|EMBL:EHQ24549.1}; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
type 11 methyltransferase
berkeley_reactor_200306_planktonic_scaffold_131577_7
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(5735..6829)
DNA (1095bp) protein (365aa)
Glycosyl transferase group 1 n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PNZ0_CHIPD
group 1 glycosyl transferase
Glycosyl transferase group 1 {ECO:0000313|EMBL:ACU58687.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_planktonic_scaffold_131577_8
Sphingobacterium sp. ACCC 05744, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(6956..7291)
DNA (336bp) protein (112aa)
Cytochrome c5 n=1 Tax=Chryseobacterium sp. CF314 RepID=J3CKX7_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:KGE13828.1}; TaxID=1229276 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. ACCC 05744.;"
dorC; DMSO/TMAO pentaheme cytochrome c subunit
berkeley_reactor_200306_planktonic_scaffold_131577_9

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7436..7942
DNA (507bp) protein (169aa)
Dihydrofolate reductase {ECO:0000256|PIRNR:PIRNR000194}; EC=1.5.1.3 {ECO:0000256|PIRNR:PIRNR000194};; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Dihydrofolate reductase n=1 Tax=uncultured bacterium RepID=F8UVU7_9BACT
dihydrofolate reductase
berkeley_reactor_200306_planktonic_scaffold_131577_10
unknown

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7987..8520
DNA (534bp) protein (178aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_131577_11
Saprospira grandis, Saprospira, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(8605..10086)
DNA (1482bp) protein (494aa)
Lipid A core-O-antigen ligase-like enyme n=1 Tax=Saprospira grandis DSM 2844 RepID=J1I8J7_9SPHI
Lipid A core-O-antigen ligase-like enyme {ECO:0000313|EMBL:EJF54798.1}; Flags: Precursor;; TaxID=694433 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Saprospiraceae; Saprospira.;" source="Saprospira grandis DSM 2844.;"
O-antigen polymerase
berkeley_reactor_200306_planktonic_scaffold_131577_12
unknown

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comp(10086..11039)
DNA (954bp) protein (318aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_131577_13
Haliscomenobacter hydrossis, Haliscomenobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(11081..11992)
DNA (912bp) protein (304aa)
Methyltransferase FkbM family n=1 Tax=Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767 / O) RepID=F4KPI7_HALH1
FkbM family methyltransferase
Methyltransferase FkbM family {ECO:0000313|EMBL:AEE50925.1}; TaxID=760192 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Saprospiraceae; Haliscomenobacter.;" source="Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767; / O).;"
berkeley_reactor_200306_planktonic_scaffold_131577_14
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(12016..13089)
DNA (1074bp) protein (358aa)
Peptide chain release factor 1 n=1 Tax=Niabella soli DSM 19437 RepID=H1NRH1_9SPHI
peptide chain release factor 1
Peptide chain release factor 1 {ECO:0000256|HAMAP-Rule:MF_00093}; Short=RF-1 {ECO:0000256|HAMAP-Rule:MF_00093};; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
berkeley_reactor_200306_planktonic_scaffold_131577_15
RIFCSPLOWO2_12_FULL_Bacteroidetes_37_12_curated, Bacteroidetes, Bacteria

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comp(13190..14143)
DNA (954bp) protein (318aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00037390A9
PKD domain-containing protein
Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_37_12_curated
Displaying 15 items

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