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berkeley_reactor_200306_planktonic_scaffold_176984_453

Organism: 2019_SCN_bioreactor_200211_planktonic_Bacteroidetes_50_37

near complete RP 49 / 55 MC: 1 BSCG 50 / 51 ASCG 14 / 38
Location: comp(513838..514917)

Top 3 Functional Annotations

Value Algorithm Source
mechanosensitive ion channel protein MscS n=1 Tax=Pedobacter agri RepID=UPI00029A0012 similarity UNIREF
DB: UNIREF100
  • Identity: 78.5
  • Coverage: 358.0
  • Bit_score: 577
  • Evalue 6.90e-162
Mechanosensitive ion channel protein MscS {ECO:0000313|EMBL:KIA91167.1}; TaxID=1069985 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter kyungheensis.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 78.4
  • Coverage: 356.0
  • Bit_score: 564
  • Evalue 8.50e-158
mechanosensitive ion channel protein MscS similarity KEGG
DB: KEGG
  • Identity: 56.4
  • Coverage: 351.0
  • Bit_score: 401
  • Evalue 1.90e-109

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Taxonomy

Pedobacter kyungheensis → Pedobacter → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 1080
ATGCAGTATCTTGATCACCTCTGGGAGCACCGGTTGCCCTGGTTCTTAAAAGACCTGATCATTGCGGTAGTGGCTGTTTTGCTCGGTCTGCTCGTTAAATTTATTATTCATAAACTCTTCGTACTCCTGTCGAAATGGTGGGACTTTATCCTTATCAAGTCTACGATCCGACGCTTGCACCGGCCGGTTTCCTGTTTCGTACCCTTGTTGTTTTTAAATGCTTCGCTGCCTTTGATGGTTATGACTGCCAACCTGAGGCGCCCGGTGGAAAAGGTGCTGGAGATAGCGCTCACAGCGGTTTTTGCCTGGATACTGATCCGTATGGTGAATGTACTCGAGGACTACTTTTATTTTAAGTACGATTTAAATAAAGAGAACAACCTTAAGGAACGGAAGATCAGGACCCAGTTGCAATTCGTGCGCAAGTTTATCGTATCGCTGATCGTACTGGTCACCCTGGCCATTATCCTGTTGAGTTTCGAGAGTATGCGTAAGATCGGTGCAGGGCTGCTTACCGGTGTGGGCATCGGCGGCATCATTATCGGTTTCGCGGCGCAGAAATCACTAGGGAATCTCCTGGCCGGTTTCCAGATTGCCTTTACACAACCTATCCGTATCGACGATGTGCTTATTGTAGAAGGCGAATGGGGCAGGGTGGAAGAGATCACGCTGACTTATGTCGTGGTCAGTATATGGGACCAGCGAAGACTGATATTGCCGATTACCTATTTTATCGAAAAGCCCTTTCAAAACTGGACCCGCGTTTCTGCGGAATTGCTGGGCACTGTTTTTCTTTACCTGGATTATACCATTCCCGTCGAGGCCTTACGGCAGGAGTACAACCGTTTGTTACAGGCACATCCGCTTTGGGATAAACGGGTCAATGCCGTGCAGGTTACCGATAATACACGCGACGGCCTGGTCGAGCTTCGTTTCTTAATGAGCGCCGCCAACTCTTCACGCGCCTTTGACCTGCGCTGTCATATACGCGAGGCCATGATCGCTTTTGTGCAAACCCGTTACCCCGAAAGCCTGCCACGGACAAGGCTTGAATTTAAAGACCAGGTAACACATAGATAA
PROTEIN sequence
Length: 360
MQYLDHLWEHRLPWFLKDLIIAVVAVLLGLLVKFIIHKLFVLLSKWWDFILIKSTIRRLHRPVSCFVPLLFLNASLPLMVMTANLRRPVEKVLEIALTAVFAWILIRMVNVLEDYFYFKYDLNKENNLKERKIRTQLQFVRKFIVSLIVLVTLAIILLSFESMRKIGAGLLTGVGIGGIIIGFAAQKSLGNLLAGFQIAFTQPIRIDDVLIVEGEWGRVEEITLTYVVVSIWDQRRLILPITYFIEKPFQNWTRVSAELLGTVFLYLDYTIPVEALRQEYNRLLQAHPLWDKRVNAVQVTDNTRDGLVELRFLMSAANSSRAFDLRCHIREAMIAFVQTRYPESLPRTRLEFKDQVTHR*