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berkeley_reactor_200306_planktonic_scaffold_176984

Search features with annotation key words

Displaying items 1-30 of 463 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_176984_1
Elizabethkingia miricola, Elizabethkingia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

115..855
DNA (741bp) protein (247aa)
pdxH_2; Pyridoxine/pyridoxamine 5'-phosphate oxidase (EC:1.4.3.5)
Pyridoxamine 5'-phosphate oxidase n=1 Tax=Maribacter sp. (strain HTCC2170 / KCCM 42371) RepID=A4ASQ9_MARSH
Uncharacterized protein {ECO:0000313|EMBL:KGO10183.1}; TaxID=172045 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Elizabethkingia.;" source="Elizabethkingia miricola (Chryseobacterium miricola).;"
berkeley_reactor_200306_planktonic_scaffold_176984_2
unknown

Not on your lists

1307..1513
DNA (207bp) protein (69aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_176984_3
Chryseobacterium sp. StRB126, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(1680..2648)
DNA (969bp) protein (323aa)
Probable transcriptional regulator, AraC family n=1 Tax=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) RepID=A6GZT9_FLAPJ
putative AraC family transcriptional regulator
Putative AraC family transcriptional regulator {ECO:0000313|EMBL:BAP31942.1}; TaxID=878220 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium sp. StRB126.;"
berkeley_reactor_200306_planktonic_scaffold_176984_4
Chryseobacterium sp. StRB126, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

2739..4253
DNA (1515bp) protein (505aa)
3-(3-hydroxy-phenyl)propionate hydroxylase n=3 Tax=Amycolatopsis mediterranei RepID=D8I7G5_AMYMU
mhpA; 3-(3-hydroxy-phenyl)propionate hydroxylase
3-(3-hydroxy-phenyl)propionate hydroxylase {ECO:0000313|EMBL:BAP31943.1}; TaxID=878220 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium sp. StRB126.;"
berkeley_reactor_200306_planktonic_scaffold_176984_5
Chryseobacterium sp. StRB126, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(4396..5280)
DNA (885bp) protein (295aa)
Uncharacterized protein n=2 Tax=Myroides odoratimimus RepID=H1GQ30_9FLAO
transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:BAP32367.1}; TaxID=878220 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium sp. StRB126.;"
berkeley_reactor_200306_planktonic_scaffold_176984_6
unknown

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comp(5580..5699)
DNA (120bp) protein (40aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_176984_7
Myroides odoratimimus, Myroides, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

5723..6457
DNA (735bp) protein (245aa)
Uncharacterized protein n=1 Tax=Myroides odoratimimus CCUG 12700 RepID=S3XH69_9FLAO
Acetyltransferase (GNAT) family
Uncharacterized protein {ECO:0000313|EMBL:EHO12297.1}; TaxID=883150 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Myroides.;" source="Myroides odoratimimus CCUG 10230.;"
berkeley_reactor_200306_planktonic_scaffold_176984_8
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(6587..7324)
DNA (738bp) protein (246aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PKJ3_CHIPD
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ACU62059.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_planktonic_scaffold_176984_9
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(7390..8271)
DNA (882bp) protein (294aa)
Transcriptional regulator, AraC family n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PKJ4_CHIPD
AraC family transcriptional regulator
Transcriptional regulator, AraC family {ECO:0000313|EMBL:ACU62060.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_planktonic_scaffold_176984_10
unknown

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comp(8416..8925)
DNA (510bp) protein (170aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_176984_11
unknown

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comp(9117..10664)
DNA (1548bp) protein (516aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_176984_12
Pedobacter kyungheensis, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(11108..11860)
DNA (753bp) protein (251aa)
4Fe-4S ferredoxin iron-sulfur binding domain-containing protein n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1Y920_9SPHI
Fumarate reductase {ECO:0000313|EMBL:KIA96145.1}; TaxID=1069985 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter kyungheensis.;"
succinate dehydrogenase/fumarate reductase iron-sulfur subunit
berkeley_reactor_200306_planktonic_scaffold_176984_13
Flavobacterium johnsoniae, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(11911..13818)
DNA (1908bp) protein (636aa)
Succinate dehydrogenase subunit A {ECO:0000313|EMBL:ABQ06341.1}; EC=1.3.5.1 {ECO:0000313|EMBL:ABQ06341.1};; Flags: Precursor;; TaxID=376686 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101); (Cytophaga johnsonae).;"
sdhA; succinate dehydrogenase flavoprotein subunit (EC:1.3.5.1)
Succinate dehydrogenase subunit A n=1 Tax=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) RepID=A5FEM1_FLAJ1
berkeley_reactor_200306_planktonic_scaffold_176984_14
Pedobacter kyungheensis, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(13823..14482)
DNA (660bp) protein (220aa)
Succinate dehydrogenase (Or fumarate reductase) cytochrome b subunit, b558 family n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1Y918_9SPHI
Succinate dehydrogenase {ECO:0000313|EMBL:KIA96147.1}; TaxID=1069985 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter kyungheensis.;"
succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family
berkeley_reactor_200306_planktonic_scaffold_176984_15
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(14502..15932)
DNA (1431bp) protein (477aa)
Anion transporter n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1Y917_9SPHI
Putative malate transporter {ECO:0000313|EMBL:GAO43521.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
anion transporter
berkeley_reactor_200306_planktonic_scaffold_176984_16
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(15945..17102)
DNA (1158bp) protein (386aa)
Phosphate-selective porin O and P n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1Y916_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:GAO43520.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_176984_17
Sphingobacterium spiritivorum, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

17370..19868
DNA (2499bp) protein (833aa)
Transporter, small conductance mechanosensitive ion channel MscS family protein n=1 Tax=Sphingobacterium spiritivorum ATCC 33861 RepID=D7VTB9_9SPHI
Transporter, small conductance mechanosensitive ion channel MscS family protein {ECO:0000313|EMBL:EFK57020.1}; TaxID=525373 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium spiritivorum ATCC 33861.;"
mechanosensitive ion channel MscS
berkeley_reactor_200306_planktonic_scaffold_176984_18
unknown

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comp(19959..20318)
DNA (360bp) protein (120aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_176984_19
Pedobacter kyungheensis, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(20417..20830)
DNA (414bp) protein (138aa)
Putative membrane protein n=1 Tax=Sphingobacterium spiritivorum ATCC 33300 RepID=C2FUN8_9SPHI
Membrane protein {ECO:0000313|EMBL:KIA96401.1}; TaxID=1069985 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter kyungheensis.;"
putative membrane protein
berkeley_reactor_200306_planktonic_scaffold_176984_20
Sphingobacterium sp. PM2-P1-29, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(21041..21559)
DNA (519bp) protein (173aa)
Uncharacterized protein n=1 Tax=Sphingobacterium sp. (strain 21) RepID=F4CBU3_SPHS2
Uncharacterized protein {ECO:0000313|EMBL:CDS93271.1}; TaxID=403776 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. PM2-P1-29.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_176984_21
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(21642..23051)
DNA (1410bp) protein (470aa)
Transcriptional regulator, GntR family with aminotransferase domain n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PNJ8_CHIPD
GntR family transcriptional regulator
Transcriptional regulator, GntR family with aminotransferase domain {ECO:0000313|EMBL:ACU64098.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
berkeley_reactor_200306_planktonic_scaffold_176984_22
Nitritalea halalkaliphila, Nitritalea, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

23147..25081
DNA (1935bp) protein (645aa)
1-deoxy-D-xylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897}; EC=2.2.1.7 {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897};; 1-deoxyxylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315}; TaxID=1189621 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Nitritalea.;" source="Nitritalea halalkaliphila LW7.;"
1-deoxy-D-xylulose-5-phosphate synthase n=1 Tax=Nitritalea halalkaliphila LW7 RepID=I5BVN7_9BACT
1-deoxy-D-xylulose-5-phosphate synthase
berkeley_reactor_200306_planktonic_scaffold_176984_23
Flavobacterium rivuli, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

25221..26063
DNA (843bp) protein (281aa)
hypothetical protein n=1 Tax=Flavobacterium rivuli RepID=UPI0003809F99
AraC family transcriptional regulator {ECO:0000313|EMBL:KGO85232.1}; TaxID=1121895 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium rivuli WB 3.3-2 = DSM 21788.;"
AraC family transcriptional regulator
berkeley_reactor_200306_planktonic_scaffold_176984_24
Pedobacter sp. BAL39, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

26141..27310
DNA (1170bp) protein (390aa)
Uncharacterized protein n=1 Tax=Pedobacter sp. BAL39 RepID=A6EHV4_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:EDM34894.1}; TaxID=391596 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. BAL39.;"
aromatic-ring hydroxylase
berkeley_reactor_200306_planktonic_scaffold_176984_25
Sphingobacterium spiritivorum, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

27307..28017
DNA (711bp) protein (237aa)
Oxidoreductase, FAD-binding protein n=1 Tax=Sphingobacterium spiritivorum ATCC 33861 RepID=D7VN97_9SPHI
Oxidoreductase, FAD-binding protein {ECO:0000313|EMBL:EFK57394.1}; TaxID=525373 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium spiritivorum ATCC 33861.;"
oxidoreductase FAD-binding domain-containing protein
berkeley_reactor_200306_planktonic_scaffold_176984_26
Flammeovirgaceae bacterium 311, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

28185..28643
DNA (459bp) protein (153aa)
hypothetical protein n=1 Tax=Pontibacter roseus RepID=UPI0003663E99
Uncharacterized protein {ECO:0000313|EMBL:AHM60303.1}; TaxID=1257021 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Flammeovirgaceae; unclassified Flammeovirgaceae.;" source="Flammeovirgaceae bacterium 311.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_176984_27
Chryseobacterium vrystaatense, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

29061..30650
DNA (1590bp) protein (530aa)
multidrug MFS transporter n=1 Tax=Kribbella catacumbae RepID=UPI0003751080
Multidrug MFS transporter {ECO:0000313|EMBL:KFF23684.1}; TaxID=307480 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium vrystaatense.;"
multidrug MFS transporter
berkeley_reactor_200306_planktonic_scaffold_176984_28
Dysgonomonas gadei, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

30737..32098
DNA (1362bp) protein (454aa)
Putative uncharacterized protein n=1 Tax=Dysgonomonas gadei ATCC BAA-286 RepID=F5J233_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EGK00289.1}; TaxID=742766 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas gadei ATCC BAA-286.;"
amino acid permease
berkeley_reactor_200306_planktonic_scaffold_176984_29
Saprospira grandis, Saprospira, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

32104..32805
DNA (702bp) protein (234aa)
ermC; type 11 methyltransferase (EC:2.1.1.184)
Methylase involved in ubiquinone/menaquinone biosynthesis n=1 Tax=Saprospira grandis DSM 2844 RepID=J0Y0L9_9SPHI
Methylase involved in ubiquinone/menaquinone biosynthesis {ECO:0000313|EMBL:EJF55081.1}; Flags: Precursor;; TaxID=694433 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Saprospiraceae; Saprospira.;" source="Saprospira grandis DSM 2844.;"
berkeley_reactor_200306_planktonic_scaffold_176984_30
Pedobacter antarcticus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

32811..33425
DNA (615bp) protein (205aa)
Methyltransferase domain protein n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=D7VYD6_9FLAO
Methyltransferase {ECO:0000313|EMBL:KEQ30219.1}; TaxID=1358423 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter antarcticus 4BY.;"
type 11 methyltransferase
Displaying items 1-30 of 463 in total

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