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berkeley_reactor_200306_planktonic_scaffold_176984

Search features with annotation key words

Displaying items 31-60 of 463 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_176984_31
CG_Arma_02, Armatimonadetes, Bacteria

Not on your lists

33871..36411
DNA (2541bp) protein (847aa)
Uncharacterized protein n=1 Tax=Flavobacteria bacterium (strain BBFL7) RepID=Q26DD1_FLABB
PDK repeat-containing protein
Tax=CG_Arma_02
berkeley_reactor_200306_planktonic_scaffold_176984_32
Flavobacterium rivuli, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(36606..37823)
DNA (1218bp) protein (406aa)
hypothetical protein n=1 Tax=Flavobacterium rivuli RepID=UPI00035E214A
Uncharacterized protein {ECO:0000313|EMBL:KGO86952.1}; TaxID=1121895 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium rivuli WB 3.3-2 = DSM 21788.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_176984_33
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(37876..39165)
DNA (1290bp) protein (430aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI0003625AAE
peptidase M28
Peptidase M28 {ECO:0000313|EMBL:AHF14751.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
berkeley_reactor_200306_planktonic_scaffold_176984_34
Elizabethkingia meningoseptica, Elizabethkingia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(39234..39926)
DNA (693bp) protein (231aa)
CAAX amino terminal protease n=1 Tax=Elizabethkingia meningoseptica ATCC 13253 = NBRC 12535 RepID=R9CJQ4_ELIME
CAAX amino terminal protease {ECO:0000313|EMBL:EOR29245.1}; TaxID=1216967 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Elizabethkingia.;" source="Elizabethkingia meningoseptica ATCC 13253 = NBRC 12535.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_176984_35
unknown

Not on your lists

comp(40436..40654)
DNA (219bp) protein (73aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_176984_36
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

41119..41502
DNA (384bp) protein (128aa)
Putative uncharacterized protein n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1Y317_9SPHI
Putative uncharacterized protein {ECO:0000313|EMBL:EHQ28835.1}; Flags: Precursor;; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_176984_37
unknown

Not on your lists

41454..41546
DNA (93bp) protein (31aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_176984_38
Pedobacter kyungheensis, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(41602..45528)
DNA (3927bp) protein (1309aa)
formate acetyltransferase n=1 Tax=Acinetobacter sp. GG2 RepID=UPI000318F11F
Formate acetyltransferase {ECO:0000313|EMBL:KIA94111.1}; TaxID=1069985 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter kyungheensis.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_176984_39
Sphingobacterium sp. PM2-P1-29, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(45776..46297)
DNA (522bp) protein (174aa)
Protease synthase and sporulation negative regulatory protein PAI 1 {ECO:0000313|EMBL:CDT01647.1}; EC=2.3.1.- {ECO:0000313|EMBL:CDT01647.1};; TaxID=403776 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. PM2-P1-29.;"
GCN5-related N-acetyltransferase n=1 Tax=Elizabethkingia meningoseptica ATCC 13253 = NBRC 12535 RepID=R9CHT2_ELIME
protease synthase and sporulation negative regulatory protein PAI 1
berkeley_reactor_200306_planktonic_scaffold_176984_40
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(46336..46791)
DNA (456bp) protein (152aa)
Diamine acetyltransferase n=1 Tax=Galbibacter marinus RepID=K2QH63_9FLAO
Putative acetyltransferase {ECO:0000313|EMBL:GAO45481.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
GCN5-related N-acetyltransferase
berkeley_reactor_200306_planktonic_scaffold_176984_41
Sphingobacterium paucimobilis, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

46896..48380
DNA (1485bp) protein (495aa)
Uncharacterized protein n=1 Tax=Sphingobacterium paucimobilis HER1398 RepID=U2HB86_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:ERJ59006.1}; TaxID=1346330 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium paucimobilis HER1398.;"
GntR family transcriptional regulator
berkeley_reactor_200306_planktonic_scaffold_176984_42
BJP_08E140C01_Flavobacteriales_35_8, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(48455..51055)
DNA (2601bp) protein (867aa)
hypothetical protein n=1 Tax=Flavobacteriaceae bacterium P7-3-5 RepID=UPI00037C7998
PKD domain-containing protein
Tax=BJP_08E140C01_Flavobacteriales_35_8
berkeley_reactor_200306_planktonic_scaffold_176984_43
Ktedonobacter racemifer, Ktedonobacter, Ktedonobacterales, Ktedonobacteria, Chloroflexi, Bacteria

Not on your lists

comp(51572..52123)
DNA (552bp) protein (184aa)
Bifunctional deaminase-reductase domain protein n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6U2M5_9CHLR
Bifunctional deaminase-reductase domain protein {ECO:0000313|EMBL:EFH80989.1}; TaxID=485913 species="Bacteria; Chloroflexi; Ktedonobacteria; Ktedonobacterales; Ktedonobacteraceae; Ktedonobacter.;" source="Ktedonobacter racemifer DSM 44963.;"
deaminase-reductase domain-containing protein
berkeley_reactor_200306_planktonic_scaffold_176984_44
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(52195..53010)
DNA (816bp) protein (272aa)
Transcriptional regulator, AraC family n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TPH7_NIAKG
AraC family transcriptional regulator
AraC family transcriptional regulator {ECO:0000313|EMBL:AKD53853.1}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
berkeley_reactor_200306_planktonic_scaffold_176984_45
Sporocytophaga myxococcoides, Sporocytophaga, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

53343..54560
DNA (1218bp) protein (406aa)
Tyrosine--tRNA ligase {ECO:0000256|SAAS:SAAS00105716}; EC=6.1.1.1 {ECO:0000256|SAAS:SAAS00105716};; TaxID=153721 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Sporocytophaga.;" source="Sporocytophaga myxococcoides.;"
Tyrosine--tRNA ligase n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=D7W4I0_9FLAO
tyrosyl-tRNA synthetase
berkeley_reactor_200306_planktonic_scaffold_176984_46
Sphingobacterium spiritivorum, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(54645..55154)
DNA (510bp) protein (170aa)
Uncharacterized protein n=1 Tax=Sphingobacterium spiritivorum ATCC 33861 RepID=D7VJ10_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:EEI92493.1}; TaxID=525372 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium spiritivorum ATCC 33300.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_176984_47
Elizabethkingia miricola, Elizabethkingia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(55253..55984)
DNA (732bp) protein (244aa)
Uncharacterized protein n=1 Tax=Bergeyella zoohelcum ATCC 43767 RepID=K1M5G0_9FLAO
CAAX amino terminal protease self-immunity
Uncharacterized protein {ECO:0000313|EMBL:KGO10521.1}; TaxID=172045 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Elizabethkingia.;" source="Elizabethkingia miricola (Chryseobacterium miricola).;"
berkeley_reactor_200306_planktonic_scaffold_176984_48
Flavobacterium psychrophilum, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(56176..57351)
DNA (1176bp) protein (392aa)
Probable ABC-type transport system, permease component n=1 Tax=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) RepID=A6GWD5_FLAPJ
ABC transporter permease
Probable ABC-type transport system, permease component {ECO:0000313|EMBL:CAL42408.1}; TaxID=402612 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511).;"
berkeley_reactor_200306_planktonic_scaffold_176984_49
Flavobacterium psychrophilum, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(57359..58297)
DNA (939bp) protein (313aa)
Probable ABC-type transport system, membrane fusion efflux lipoprotein component n=1 Tax=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) RepID=A6GWD6_FLAPJ
ABC transporter permease
ABC transporter permease {ECO:0000313|EMBL:AKC16171.1}; TaxID=96345 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium psychrophilum.;"
berkeley_reactor_200306_planktonic_scaffold_176984_50
Flavobacterium psychrophilum, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(58394..59806)
DNA (1413bp) protein (471aa)
Probable outer membrane efflux protein n=1 Tax=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) RepID=A6GWD7_FLAPJ
Transporter {ECO:0000313|EMBL:AKC16170.1}; TaxID=96345 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium psychrophilum.;"
transporter
berkeley_reactor_200306_planktonic_scaffold_176984_51
unknown

Not on your lists

60110..60511
DNA (402bp) protein (134aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_176984_52
Hymenobacter sp. APR13, Hymenobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

60808..61557
DNA (750bp) protein (250aa)
hypothetical protein n=1 Tax=Dyadobacter beijingensis RepID=UPI0003824009
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AII50364.1}; TaxID=1356852 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Hymenobacter.;" source="Hymenobacter sp. APR13.;"
berkeley_reactor_200306_planktonic_scaffold_176984_53
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

61617..62594
DNA (978bp) protein (326aa)
hypothetical protein n=1 Tax=Dyadobacter beijingensis RepID=UPI00037866F4
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACT95736.1}; Flags: Precursor;; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
berkeley_reactor_200306_planktonic_scaffold_176984_54
Sphingobacterium sp. 21, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(62855..63316)
DNA (462bp) protein (154aa)
Alpha/beta hydrolase fold protein n=1 Tax=Sphingobacterium sp. (strain 21) RepID=F4C7M6_SPHS2
alpha/beta hydrolase
Alpha/beta hydrolase fold protein {ECO:0000313|EMBL:ADZ81087.1}; Flags: Precursor;; TaxID=743722 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. (strain 21).;"
berkeley_reactor_200306_planktonic_scaffold_176984_55
Pedobacter kyungheensis, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(63355..63666)
DNA (312bp) protein (104aa)
Alpha/beta hydrolase fold protein n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VUC5_DYAFD
Alpha/beta hydrolase {ECO:0000313|EMBL:KIA95378.1}; TaxID=1069985 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter kyungheensis.;"
alpha/beta hydrolase fold protein
berkeley_reactor_200306_planktonic_scaffold_176984_56
unknown

Not on your lists

64056..64484
DNA (429bp) protein (143aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_176984_57
unknown

Not on your lists

comp(65407..65541)
DNA (135bp) protein (45aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_176984_58
Thiothrix nivea, Thiothrix, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

66004..67722
DNA (1719bp) protein (573aa)
Cna B domain protein n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BN48_9GAMM
Cna B domain protein {ECO:0000313|EMBL:EIJ32791.1}; Flags: Precursor;; TaxID=870187 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.;" source="Thiothrix nivea DSM 5205.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_176984_59
Candidatus Cloacimonas acidaminovorans, Candidatus Cloacimonas, Cloacimonetes, Bacteria

Not on your lists

comp(67999..69930)
DNA (1932bp) protein (644aa)
Uncharacterized protein n=1 Tax=Cloacamonas acidaminovorans (strain Evry) RepID=B0VGN2_CLOAI
Uncharacterized protein {ECO:0000313|EMBL:CAO80469.1}; TaxID=459349 species="Bacteria; Cloacimonetes; Candidatus Cloacimonas.;" source="Cloacamonas acidaminovorans (strain Evry).;"
putative adhesin
berkeley_reactor_200306_planktonic_scaffold_176984_60
Saprospira grandis, Saprospira, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(69964..73281)
DNA (3318bp) protein (1106aa)
Cell wall/surface repeat-containing protein n=1 Tax=Saprospira grandis (strain Lewin) RepID=H6L1E8_SAPGL
cell wall/surface repeat-containing protein
Cell wall/surface repeat-containing protein {ECO:0000313|EMBL:AFC23489.1}; TaxID=984262 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Saprospiraceae; Saprospira.;" source="Saprospira grandis (strain Lewin).;"
Displaying items 31-60 of 463 in total

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