ggKbase home page

berkeley_reactor_200306_planktonic_scaffold_176984_50

Organism: 2019_SCN_bioreactor_200211_planktonic_Bacteroidetes_50_37

near complete RP 49 / 55 MC: 1 BSCG 50 / 51 ASCG 14 / 38
Location: comp(58394..59806)

Top 3 Functional Annotations

Value Algorithm Source
Probable outer membrane efflux protein n=1 Tax=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) RepID=A6GWD7_FLAPJ similarity UNIREF
DB: UNIREF100
  • Identity: 52.6
  • Coverage: 454.0
  • Bit_score: 472
  • Evalue 3.10e-130
Transporter {ECO:0000313|EMBL:AKC16170.1}; TaxID=96345 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium psychrophilum.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 53.1
  • Coverage: 454.0
  • Bit_score: 473
  • Evalue 3.40e-130
transporter similarity KEGG
DB: KEGG
  • Identity: 52.6
  • Coverage: 454.0
  • Bit_score: 472
  • Evalue 8.90e-131

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Flavobacterium psychrophilum → Flavobacterium → Flavobacteriales → Flavobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 1413
ATGGTGCTGAAAAAAAGAAACTCCTGTCTCCTGGTGCAGCGCATGATGCTGTTACTGCTCTGGCTCCCTTACTCCGCTATAAACGCCCAGCAACTGATCCCCCCGCAACTCAAAGAACCGGTACAACATGCGATCAGCACAGATTACGGGTTAATGAACCAGTCGCTCGAAGTTGCCAAAACCCAAACCATGGCAGAGGGCGTAAAATCCAAATTGCTTCCCGAAGTATCTGCGATCGGCGGCTATAGTTATTTCTATGGCAATGGCACGATCGATATCCCCTCTGTAACATTACCCATAACCGGTATTGAATTGTTCAAAGGCAGCCGGCAGTTTTCGACCTATGGCAATATAGCCACCGTAGGACTGCATGCCAGCCAGGTTGTCTTTAGCGGCTTACAGATCACCAATGCAGAAAAGGCATTGGCACAAAAAGCAAAGGCGCAGCAACTGCTGGCTGAAGCGTCTGCCGAAACGGTAGCTAAGGATGTGCTCGGCACCTTCGACCAGGTCATGCTCCTGCAGGAGGCGGATAAACTGATCGCCGACTCGGAAGTCCGGTTGGAAAAAGAACAACAACGTGTTACCGAAGGTATTCGTAACGGGCTGGCCATTCCCTACGACCGGGATAAGATAAGCCTGGCGATGCTGGAGCTTAAGGCGAAAAAAACAGAGGTGGCCGGCAACCGGAAAGTACTGCTGCAAAAGCTGGCACAGCTTACCCATATGCCTGTGGAAACGCTGGCCACGATAACCTATCCCCTGGAAAGCATGCTCCTCCCTGATAATGCGAAACCGGACATCGAGCAGCGTAAAGAATTGCAGGCGCTGAAACTGTCGGGTGAAGCTTACAATCACCTGCTCCGCAAAGAGCAAGGTGCAGCCTTACCGCAGCTCTTTGCCTTCGGATCGGTTGCTTATTTTAATATGTTCCGGGCGGGTGTTACCGCAAAGGATGTAGGTTTATTAGGCGATGTACACCTGAAGCTCAACCAGATGGCCCTGATGCCCAATGTGCTGGTTGGTGTCGGCGCCAAATGGAATATCTATGCCGGCGGTCATATCCGGCATAAAGCGCAGGAGGTGAAATACGATATCGCGATCAATAACAATAAAATACAGGATACCCGCGAGAAGCTAAACCTGCTGTTGCAAAAAAATACGACCGATTATGAAACCGCCGGCGAATTGATTGCCGTTGGTCAGCAACAGTTGAAGATCGCCCGGAACAATATGTTTATGGCGGGCAAACAGTTTGAAGAAGGCCTGATCGATGTTACGGAAAGACTGGAGGCGGAAAACGACCTCTTTAAGGCTTCCCTGAATTATTACATGCAGGTCGTACAGCAACGGAAGACGGCCCTGGAAATCCTGCATACTACCGGGCAGCTGCTGGACGAAATTAAAAGATAA
PROTEIN sequence
Length: 471
MVLKKRNSCLLVQRMMLLLLWLPYSAINAQQLIPPQLKEPVQHAISTDYGLMNQSLEVAKTQTMAEGVKSKLLPEVSAIGGYSYFYGNGTIDIPSVTLPITGIELFKGSRQFSTYGNIATVGLHASQVVFSGLQITNAEKALAQKAKAQQLLAEASAETVAKDVLGTFDQVMLLQEADKLIADSEVRLEKEQQRVTEGIRNGLAIPYDRDKISLAMLELKAKKTEVAGNRKVLLQKLAQLTHMPVETLATITYPLESMLLPDNAKPDIEQRKELQALKLSGEAYNHLLRKEQGAALPQLFAFGSVAYFNMFRAGVTAKDVGLLGDVHLKLNQMALMPNVLVGVGAKWNIYAGGHIRHKAQEVKYDIAINNNKIQDTREKLNLLLQKNTTDYETAGELIAVGQQQLKIARNNMFMAGKQFEEGLIDVTERLEAENDLFKASLNYYMQVVQQRKTALEILHTTGQLLDEIKR*