ggKbase home page

berkeley_reactor_200306_planktonic_scaffold_333344_478

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_60_20

near complete RP 47 / 55 MC: 1 BSCG 48 / 51 ASCG 15 / 38
Location: comp(533273..536197)

Top 3 Functional Annotations

Value Algorithm Source
UPI0003CEDAA4 related cluster n=1 Tax=unknown RepID=UPI0003CEDAA4 similarity UNIREF
DB: UNIREF100
  • Identity: 31.5
  • Coverage: 934.0
  • Bit_score: 391
  • Evalue 1.90e-105
Transporter {ECO:0000313|EMBL:ESY72056.1}; TaxID=1287252 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC252B00.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 31.5
  • Coverage: 934.0
  • Bit_score: 391
  • Evalue 2.70e-105
outer membrane autotransporter barrel domain-containing protein similarity KEGG
DB: KEGG
  • Identity: 31.9
  • Coverage: 916.0
  • Bit_score: 380
  • Evalue 1.20e-102

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Mesorhizobium sp. LNHC252B00 → Mesorhizobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 2925
ATGGCACTGAAACAAATTCACTGGACGCATCACGCAACCAGACGCATAAGTGATCACTTACACCAAACTTTCGTGCTGCCATCACGTCTCCATTTTCACCGCCTGCTTGCTGTTTGCTGCTGCATCCTAGCCTCGTTCGCCTCTGTTTCTGCACAAACCACAGTGGACTGGAAAGACAACAACACGGGGAGTTGGTTTGACCCGGCAAATTGGTGGGGCGGCAACATCCCGCAATCTTATTACAACGCCTCGATCGACAACAACGGTGATGCTTCCGTACCCTACAATACAGGTGTCCCAGGAAATGCCTCGACGTTAAACATCGGCGTGAGCGGAACCGGTACGCTTCGCATTGTTTCTGGAGGCGGCATCGTTGCGACCGTCGCGTACCTCGCAAATACAAGTACCGGCAACGGCACCCTTATCGTCAATGGAGGAGGCTCCTATCTTGCTCTCTCCAACAATATCTCCGTGGGCGAACGCGGTACCGCTCTCCTCAATATCAATGCCGGGGGTGTTGTCTCCAATGCGTATGGAAAGGTCGGCGTATACGCCGGAAGCACCGGTACGGTCTCGGTCGCGGGGGCGACATCCGCCTGGAACAACTCGGGCGATATTATTGTCGGGGAATCCGGAACCGGCAGTCTGAATGTGTCCAGCGCGGCTACGGCCACGAGCACGCAAGGATTCATCGGCTACAATGGCTCGGGGAGCGGCGCGGTCTCGGTAGATGGTGTCGGCTCGATCTGGAAACTCCGCAGCTATCTTTTCGTCGGATATTTCGGTTCGGGACGGCTCGACATTACGGCAGGCGGCAAGGTTGCCAGCGATATGACTTCCTCTGCGGGATCAACTGCATCCATCGGACACCTGAGCGGTTCAACAGGCAATGTCTACGTGAGCGGCGTCGGCTCGACATTGGCAATGAAGGACGACCTCAGTATCGGCGAGCAAGGCTCTGGCACGCTCTCCATTGCCAACAAAGGAACGGTCTCCAGCTCCTACGGGACCATCGGAAACTACGCCTCGGGTTCCGGGTCCGTGACCGTCAACGGAGTGGGTTCCAAATGGACGAACCGCAACGATCTTTTCGTGGGCAAGTCCGGCACCGGCTATCTCACCGTGATCGAGGGTGCGATCGTCGAATCTGACTCCGGTTATGTGGGATACGGAGCAACCAATACCAGTGCCGCCACCATCAACGGTGCCGGGTCTCGCTGGGACAACTCAGCCAGTCTGCACGTCGGATATCAAGGTGCTGGAACGCTCAATATCGAATCCGGAGCAGTCGTTACAAGCACCGACGGCTTCATTGGCGAAGATAACGGATCCTTGAAAGGTTTTGTGGATATCTCCGGCATTGACTCCGCCTGGAGTGCATCCGGGGATCTGGCCATCGGAGCAGCTGGCACAGGAACGCTCAAATTGCGCGAAGGTGGAGCGGCAGACAGCGAAAATGCATCGCTCGGTGTTTCCTCATCAGGAATCGGAGAAGCAAACCTTTCTGGAGCTGACACGCTCTGGACCATTCGTTCATCGCTCTACGTCGGGCGAAATGGATCCGGCAAAGTCAATATCGGAACCGGGGCTGTCGCAACAGCGACCTCCGCCGTTATCGGGGAAAAGCTTTCGGCCAATACGAGTGAAGTGAACGTTTCCGGCACCGACTCTCAATGGAACGTCGCATCATCGGTCGTCATCGGAGACGAAGGTCTAGGCCAGCTCAACGTGACCAGTGGCGCAAGCGCCTCGGCGGGCTCGGCCGTACTCGGTAATGCCACCGGATCAAATGGCGCGGCCAATCTCGCAAACAATGGATCGGCCTGGCAGGTCACAGGGGCCTTGACCATCGGCAATCTCGGGCAAGGCACCTTGGGCATGCTCGGAGGAGAGGTTTCGACCGGCTCTGCCATCCTTGGCAATCAGATCGGCTCCAGCGGTAGCGCCACCGTCTTTAGCGGCTCCTGGACCAATACTGGCTCGCTCGTCGTGGGCAAACTTGGCGAGGGAACATTGCGCCTCACAGGGGACGGGCTTCTGAAGGTCGGAGCTACTGGCAACGGTGCGGTTGTCCTGGCCGAGTCCTCCGGATCGATCGGCACCTTGGTGATCGGAGAAGGTACGACGGCTGGCACGCTGCAAGCCGCATCGGTCACCGGAGGTCTTGGCACGGCCAGCGTAAATTTCAATCACTCCACAACAGTGAACTTCACCCCCACCCTCGCGGGTAATCTCTCCGTAACCAAGACAGGGACCGGACGGCTCGTATTCGACTACGAAAACACCTATACCGGTTCCACTACGATCGGAGATGGGGCCATCAAGGTTGGAAACACAACCGGCAGCGCCACCGGCTCCGGCAAGGTGATCGTCGATCGGCTCGGCTCCCTCATCGGCTCCGGCAACGTCAGTGGCGAGGTGGAAATCAGCGGACTCATCTCGCCGGGTGACAATAGTGTCGCCAAGCTCTCAACCGGCTCGCAGACCTGGAAAAATGAGGGTATTTATGCTTGGGAAATCCAAAGTCTCAGCGGCCCATCGGGCGACACATGGGATCTTCTGGAAATCACCGGCAACCTGACCATTGAAAGCACGCTGGAGAACCCATTTACCATCGCCGTCTCCACTCTCACCCTCGAGGGCCAGGCGGGATTGCTTCAAGGCTTCTCTGATACCCAAAACTACACCTGGACGATTCTTTCCGTTACCGGGAGCATCGGCACCTGGAGCATGAGCCAGATCGTACTCGATGTGAGCGGATTCGCGAACGACTACAGCGGCTCCTTTTCCCTCGCTCAGGAAGACAACCACCTGAACCTCGTGTACACCGTTCCTGAACCCTCCACTTGGGGAATGCTCTTTTTCGGCATGGTCGGTCTTGTCACGTGGTTCCGGCAAACCCGCCGACTCGTAAAACGCCCCTGA
PROTEIN sequence
Length: 975
MALKQIHWTHHATRRISDHLHQTFVLPSRLHFHRLLAVCCCILASFASVSAQTTVDWKDNNTGSWFDPANWWGGNIPQSYYNASIDNNGDASVPYNTGVPGNASTLNIGVSGTGTLRIVSGGGIVATVAYLANTSTGNGTLIVNGGGSYLALSNNISVGERGTALLNINAGGVVSNAYGKVGVYAGSTGTVSVAGATSAWNNSGDIIVGESGTGSLNVSSAATATSTQGFIGYNGSGSGAVSVDGVGSIWKLRSYLFVGYFGSGRLDITAGGKVASDMTSSAGSTASIGHLSGSTGNVYVSGVGSTLAMKDDLSIGEQGSGTLSIANKGTVSSSYGTIGNYASGSGSVTVNGVGSKWTNRNDLFVGKSGTGYLTVIEGAIVESDSGYVGYGATNTSAATINGAGSRWDNSASLHVGYQGAGTLNIESGAVVTSTDGFIGEDNGSLKGFVDISGIDSAWSASGDLAIGAAGTGTLKLREGGAADSENASLGVSSSGIGEANLSGADTLWTIRSSLYVGRNGSGKVNIGTGAVATATSAVIGEKLSANTSEVNVSGTDSQWNVASSVVIGDEGLGQLNVTSGASASAGSAVLGNATGSNGAANLANNGSAWQVTGALTIGNLGQGTLGMLGGEVSTGSAILGNQIGSSGSATVFSGSWTNTGSLVVGKLGEGTLRLTGDGLLKVGATGNGAVVLAESSGSIGTLVIGEGTTAGTLQAASVTGGLGTASVNFNHSTTVNFTPTLAGNLSVTKTGTGRLVFDYENTYTGSTTIGDGAIKVGNTTGSATGSGKVIVDRLGSLIGSGNVSGEVEISGLISPGDNSVAKLSTGSQTWKNEGIYAWEIQSLSGPSGDTWDLLEITGNLTIESTLENPFTIAVSTLTLEGQAGLLQGFSDTQNYTWTILSVTGSIGTWSMSQIVLDVSGFANDYSGSFSLAQEDNHLNLVYTVPEPSTWGMLFFGMVGLVTWFRQTRRLVKRP*