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berkeley_reactor_200306_planktonic_scaffold_130971

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_130971_1
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(33..1349)
DNA (1317bp) protein (439aa)
ABC transporter substrate-binding protein, partial n=1 Tax=Corynebacterium-like bacterium B27 RepID=UPI0003B4B4B4
Multiple sugar-binding protein {ECO:0000313|EMBL:KJL29638.1}; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
sugar-binding lipoprotein
berkeley_reactor_200306_planktonic_scaffold_130971_2
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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1562..2575
DNA (1014bp) protein (338aa)
HTH-type transcriptional repressor CytR {ECO:0000313|EMBL:KJL29639.1}; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
Putative transcriptional regulator id=7720310 bin=CNBR_ACT species=marine actinobacterium PHSC20C1 genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
Transcriptional regulator
berkeley_reactor_200306_planktonic_scaffold_130971_3
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(2599..3864)
DNA (1266bp) protein (422aa)
Glucosidase YgjK {ECO:0000313|EMBL:KJL29642.1}; EC=3.2.1.- {ECO:0000313|EMBL:KJL29642.1};; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
glycoside hydrolase family 37 n=1 Tax=Corynebacterium-like bacterium B27 RepID=UPI0003B40A58
glycoside hydrolase family 37
berkeley_reactor_200306_planktonic_scaffold_130971_4
Microbacterium sp. TS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(3900..4613)
DNA (714bp) protein (238aa)
hypothetical protein n=1 Tax=Humibacter albus RepID=UPI0003B3A499
Uncharacterized protein {ECO:0000313|EMBL:GAD34015.1}; TaxID=1344956 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. TS-1.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_130971_5
unknown

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4892..5176
DNA (285bp) protein (95aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_130971_6
Microbacterium sp. TS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(5703..6458)
DNA (756bp) protein (252aa)
hypothetical protein n=1 Tax=Microbacterium paraoxydans RepID=UPI000369414F
Putative dehydrogenase {ECO:0000313|EMBL:GAD34014.1}; TaxID=1344956 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. TS-1.;"
dehydrogenase with different specificities
berkeley_reactor_200306_planktonic_scaffold_130971_7
Microbacterium sp. TS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(6466..7314)
DNA (849bp) protein (283aa)
NADP oxidoreductase coenzyme F420-dependent n=1 Tax=Microbacterium sp. TS-1 RepID=U2YTK8_9MICO
NADP oxidoreductase coenzyme F420-dependent {ECO:0000313|EMBL:GAD34013.1}; TaxID=1344956 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. TS-1.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_130971_8
Microbacterium sp. SA39, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(7311..8105)
DNA (795bp) protein (265aa)
Uncharacterized protein n=1 Tax=Microbacterium sp. TS-1 RepID=U2XM14_9MICO
Xylose isomerase-like TIM barrel {ECO:0000313|EMBL:KJQ53453.1}; TaxID=1263625 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. SA39.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_130971_9
Microbacterium ginsengisoli, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(8102..8872)
DNA (771bp) protein (257aa)
Triosephosphate isomerase {ECO:0000313|EMBL:KJL44618.1}; EC=5.3.1.1 {ECO:0000313|EMBL:KJL44618.1};; TaxID=400772 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium ginsengisoli.;"
hypothetical protein n=1 Tax=Microbacterium yannicii RepID=UPI000370904B
triosephosphate isomerase
berkeley_reactor_200306_planktonic_scaffold_130971_10
Microbacterium sp. TS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(8863..9336)
DNA (474bp) protein (158aa)
Ribose 5-phosphate isomerase n=1 Tax=Microbacterium sp. TS-1 RepID=U2XLL2_9MICO
Ribose 5-phosphate isomerase {ECO:0000313|EMBL:GAD34010.1}; TaxID=1344956 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. TS-1.;"
ribose 5-phosphate isomerase RpiB
berkeley_reactor_200306_planktonic_scaffold_130971_11
Microbacterium sp. TS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(9333..9965)
DNA (633bp) protein (211aa)
Dihydroxyacetone kinase n=1 Tax=Microbacterium sp. TS-1 RepID=U2YLV2_9MICO
Dihydroxyacetone kinase {ECO:0000313|EMBL:GAD34009.1}; TaxID=1344956 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. TS-1.;"
dihydroxyacetone kinase
Displaying 11 items

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