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berkeley_reactor_200306_planktonic_scaffold_174517

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Displaying items 1-30 of 110 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_174517_1
Microbacterium sp. oral taxon 186, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(406..1497)
DNA (1092bp) protein (364aa)
Uncharacterized protein n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3BDX5_9MICO
Uncharacterized protein {ECO:0000313|EMBL:EPD86839.1}; TaxID=1203549 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. oral taxon 186 str. F0373.;"
acyltransferase
berkeley_reactor_200306_planktonic_scaffold_174517_2
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1526..2449)
DNA (924bp) protein (308aa)
Ornithine carbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_01109, ECO:0000256|SAAS:SAAS00106174}; Short=OTCase {ECO:0000256|HAMAP-Rule:MF_01109};; EC=2.1.3.3 {ECO:0000256|HAMAP-Rule:MF_01109, ECO:0000256|SAAS:SAAS00106174};; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
Ornithine carbamoyltransferase n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E2F4_9MICO
argF; ornithine carbamoyltransferase
berkeley_reactor_200306_planktonic_scaffold_174517_3
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2446..3738)
DNA (1293bp) protein (431aa)
Acetylornithine aminotransferase {ECO:0000256|HAMAP-Rule:MF_01107}; Short=ACOAT {ECO:0000256|HAMAP-Rule:MF_01107};; EC=2.6.1.11 {ECO:0000256|HAMAP-Rule:MF_01107};; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
Acetylornithine aminotransferase n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E2F3_9MICO
argD; ornithine/acetylornithine aminotransferase
berkeley_reactor_200306_planktonic_scaffold_174517_4
Microbacterium sp. MRS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3735..4637)
DNA (903bp) protein (301aa)
Acetylglutamate kinase {ECO:0000256|HAMAP-Rule:MF_00082, ECO:0000256|SAAS:SAAS00245375}; EC=2.7.2.8 {ECO:0000256|HAMAP-Rule:MF_00082, ECO:0000256|SAAS:SAAS00245383};; N-acetyl-L-glutamate 5-phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00082}; NAG kinase {ECO:0000256|HAMAP-Rule:MF_00082}; TaxID=1451261 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MRS-1.;"
Acetylglutamate kinase n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E2F2_9MICO
argB; acetylglutamate kinase
berkeley_reactor_200306_planktonic_scaffold_174517_5
Microbacterium sp. MRS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4634..5791)
DNA (1158bp) protein (386aa)
Arginine biosynthesis bifunctional protein ArgJ n=2 Tax=Microbacterium RepID=H8E2F1_9MICO
Arginine biosynthesis bifunctional protein ArgJ {ECO:0000256|HAMAP-Rule:MF_01106}; TaxID=1451261 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MRS-1.;"
argJ; N-acetylglutamate synthase
berkeley_reactor_200306_planktonic_scaffold_174517_6
Microbacterium sp. MRS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5788..6843)
DNA (1056bp) protein (352aa)
N-acetyl-gamma-glutamyl-phosphate reductase {ECO:0000256|HAMAP-Rule:MF_00150, ECO:0000256|SAAS:SAAS00137393}; Short=AGPR {ECO:0000256|HAMAP-Rule:MF_00150};; EC=1.2.1.38 {ECO:0000256|HAMAP-Rule:MF_00150, ECO:0000256|SAAS:SAAS00137393};; N-acetyl-glutamate semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00150}; TaxID=1451261 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MRS-1.;"
N-acetyl-gamma-glutamyl-phosphate reductase n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E2F0_9MICO
argC; acetylglutamate semialdehyde dehydrogenase
berkeley_reactor_200306_planktonic_scaffold_174517_7
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7061..8050)
DNA (990bp) protein (330aa)
NAD-dependent epimerase/dehydratase n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E2E9_9MICO
NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:EIC09319.1}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
reductase
berkeley_reactor_200306_planktonic_scaffold_174517_8
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8047..9630)
DNA (1584bp) protein (528aa)
Uncharacterized protein n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3AF09_9MICO
Uncharacterized protein {ECO:0000313|EMBL:KIC56494.1}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_174517_9
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9612..10382)
DNA (771bp) protein (257aa)
ABC transporter related protein n=2 Tax=Microbacterium RepID=H8E2E7_9MICO
ABC transporter {ECO:0000313|EMBL:KIC56493.1}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
multidrug ABC transporter ATPase
berkeley_reactor_200306_planktonic_scaffold_174517_10
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10607..13171)
DNA (2565bp) protein (855aa)
Phenylalanine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00103829}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00022425};; Phenylalanyl-tRNA synthetase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
Phenylalanine--tRNA ligase beta subunit n=2 Tax=Microbacterium RepID=H8E2E5_9MICO
pheT; phenylalanyl-tRNA synthetase beta subunit
berkeley_reactor_200306_planktonic_scaffold_174517_11
Microbacterium sp. MRS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(13171..14223)
DNA (1053bp) protein (351aa)
Phenylalanine--tRNA ligase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00016813}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00089474};; Phenylalanyl-tRNA synthetase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281}; TaxID=1451261 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MRS-1.;"
Phenylalanine--tRNA ligase alpha subunit n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E2E4_9MICO
pheS; phenylalanyl-tRNA synthetase alpha subunit
berkeley_reactor_200306_planktonic_scaffold_174517_12
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14287..15216)
DNA (930bp) protein (310aa)
Polar amino acid ABC transporter, inner membrane subunit n=2 Tax=Microbacterium RepID=H8E2E3_9MICO
Amino acid ABC transporter permease {ECO:0000313|EMBL:KIC56486.1}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
amino acid ABC transporter permease
berkeley_reactor_200306_planktonic_scaffold_174517_13
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15213..15860)
DNA (648bp) protein (216aa)
Glutamate transport system permease n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3AXT1_9MICO
Amino acid ABC transporter permease {ECO:0000313|EMBL:KIC56516.1}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
amino acid ABC transporter permease
berkeley_reactor_200306_planktonic_scaffold_174517_14
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15900..16814)
DNA (915bp) protein (305aa)
ABC-type transporter, periplasmic subunit family 3 n=2 Tax=Microbacterium RepID=H8E2E1_9MICO
ABC-type transporter, periplasmic subunit family 3 {ECO:0000313|EMBL:EIC09311.1}; Flags: Precursor;; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
amino acid ABC transporter periplasmic protein
berkeley_reactor_200306_planktonic_scaffold_174517_15
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16879..17667)
DNA (789bp) protein (263aa)
ABC transporter related protein n=2 Tax=Microbacterium RepID=H8E2E0_9MICO
ABC transporter related protein {ECO:0000313|EMBL:EIC09310.1}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
gluA; polar amino acid ABC transporter ATPase
berkeley_reactor_200306_planktonic_scaffold_174517_16
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17756..18556)
DNA (801bp) protein (267aa)
tRNA/rRNA methyltransferase (SpoU) n=2 Tax=Microbacterium RepID=H8E2D9_9MICO
RNA methyltransferase {ECO:0000313|EMBL:KIC56484.1}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
rRNA methylase
berkeley_reactor_200306_planktonic_scaffold_174517_17
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(18631..19011)
DNA (381bp) protein (127aa)
50S ribosomal protein L20 n=2 Tax=Microbacterium RepID=H8E2D8_9MICO
50S ribosomal protein L20 {ECO:0000256|HAMAP-Rule:MF_00382, ECO:0000256|RuleBase:RU000560}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
rplT; ribosomal protein L20
berkeley_reactor_200306_planktonic_scaffold_174517_18
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(19042..19236)
DNA (195bp) protein (65aa)
50S ribosomal protein L35 n=3 Tax=Microbacterium RepID=H8E2D7_9MICO
50S ribosomal protein L35 {ECO:0000256|HAMAP-Rule:MF_00514, ECO:0000256|RuleBase:RU000568}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
rpmI; ribosomal protein L35
berkeley_reactor_200306_planktonic_scaffold_174517_19
Microbacterium sp. oral taxon 186, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19313..19978)
DNA (666bp) protein (222aa)
Translation initiation factor IF-3 n=2 Tax=Microbacterium RepID=H8E2D6_9MICO
Translation initiation factor IF-3 {ECO:0000256|HAMAP-Rule:MF_00080, ECO:0000256|RuleBase:RU000646}; TaxID=1203549 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. oral taxon 186 str. F0373.;"
infC; translation initiation factor 3 (IF-3)
berkeley_reactor_200306_planktonic_scaffold_174517_20
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20212..20610
DNA (399bp) protein (133aa)
ATPase n=2 Tax=Microbacterium RepID=H8E2D5_9MICO
ATPase {ECO:0000313|EMBL:KIC56481.1}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
ATPase
berkeley_reactor_200306_planktonic_scaffold_174517_21
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20623..21420)
DNA (798bp) protein (266aa)
Uncharacterized protein n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3AJ54_9MICO
Uncharacterized protein {ECO:0000313|EMBL:KIC56480.1}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_174517_22
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21404..22150)
DNA (747bp) protein (249aa)
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase {ECO:0000256|HAMAP-Rule:MF_01014}; EC=5.3.1.16 {ECO:0000256|HAMAP-Rule:MF_01014};; Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase {ECO:0000256|HAMAP-Rule:MF_01014}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase n=2 Tax=Microbacterium RepID=H8E2D3_9MICO
priA; phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase
berkeley_reactor_200306_planktonic_scaffold_174517_23
Microbacterium sp. oral taxon 186, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22212..22880)
DNA (669bp) protein (223aa)
Imidazole glycerol phosphate synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; EC=2.4.2.- {ECO:0000256|HAMAP-Rule:MF_00278};; IGP synthase glutamine amidotransferase subunit {ECO:0000256|HAMAP-Rule:MF_00278}; IGP synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; ImGP synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; TaxID=1203549 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. oral taxon 186 str. F0373.;"
Imidazole glycerol phosphate synthase subunit HisH n=2 Tax=Microbacterium RepID=H8E2D2_9MICO
hisH; glutamine amidotransferase
berkeley_reactor_200306_planktonic_scaffold_174517_24
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22877..23488)
DNA (612bp) protein (204aa)
Imidazoleglycerol-phosphate dehydratase {ECO:0000256|HAMAP-Rule:MF_00076, ECO:0000256|RuleBase:RU000599}; Short=IGPD {ECO:0000256|HAMAP-Rule:MF_00076};; EC=4.2.1.19 {ECO:0000256|HAMAP-Rule:MF_00076, ECO:0000256|RuleBase:RU000599};; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
Imidazoleglycerol-phosphate dehydratase n=2 Tax=Microbacterium RepID=H8E2D1_9MICO
hisB; imidazoleglycerol-phosphate dehydratase
berkeley_reactor_200306_planktonic_scaffold_174517_25
Microbacterium sp. oral taxon 186, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23543..24649)
DNA (1107bp) protein (369aa)
Histidinol-phosphate aminotransferase {ECO:0000256|HAMAP-Rule:MF_01023}; EC=2.6.1.9 {ECO:0000256|HAMAP-Rule:MF_01023};; Imidazole acetol-phosphate transaminase {ECO:0000256|HAMAP-Rule:MF_01023}; TaxID=1203549 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. oral taxon 186 str. F0373.;"
Histidinol-phosphate aminotransferase n=2 Tax=Microbacterium RepID=H8E2D0_9MICO
hisC1; histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase
berkeley_reactor_200306_planktonic_scaffold_174517_26
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24707..25129)
DNA (423bp) protein (141aa)
Peptidoglycan-binding lysin domain-containing protein n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E2C9_9MICO
Uncharacterized protein {ECO:0000313|EMBL:KIC56475.1}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_174517_27
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25406..26071
DNA (666bp) protein (222aa)
LexA repressor {ECO:0000256|HAMAP-Rule:MF_00015, ECO:0000256|SAAS:SAAS00008101}; EC=3.4.21.88 {ECO:0000256|HAMAP-Rule:MF_00015, ECO:0000256|SAAS:SAAS00008054};; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
LexA repressor n=2 Tax=Microbacterium RepID=H8E2C8_9MICO
lexA; SOS-response transcriptional repressors
berkeley_reactor_200306_planktonic_scaffold_174517_28
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26074..27090
DNA (1017bp) protein (339aa)
Uncharacterized protein n=2 Tax=Microbacterium RepID=H8E2C7_9MICO
Uncharacterized protein {ECO:0000313|EMBL:EIC09297.1}; Flags: Precursor;; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_174517_29
marine actinobacterium PHSC20C1, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27100..29364)
DNA (2265bp) protein (755aa)
alpha-glucosidase n=1 Tax=Agromyces subbeticus RepID=UPI0003B5F295
Uncharacterized protein {ECO:0000313|EMBL:EAR25509.1}; TaxID=312284 species="Bacteria; Actinobacteria.;" source="marine actinobacterium PHSC20C1.;"
glycoside hydrolase family protein
berkeley_reactor_200306_planktonic_scaffold_174517_30
marine actinobacterium PHSC20C1, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(29361..30485)
DNA (1125bp) protein (375aa)
glycoside hydrolase 15-like protein id=7721815 bin=CNBR_ACT species=marine actinobacterium PHSC20C1 genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
Glucan 1,4-alpha-glucosidase (Glucoamylase) {ECO:0000313|EMBL:EAR25510.1}; TaxID=312284 species="Bacteria; Actinobacteria.;" source="marine actinobacterium PHSC20C1.;"
glycoside hydrolase 15-like protein
Displaying items 1-30 of 110 in total

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