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berkeley_reactor_200306_planktonic_scaffold_174515_33

Organism: 2019_SCN_bioreactor_200211_planktonic_Micrococcales_71_20

near complete RP 51 / 55 MC: 1 BSCG 51 / 51 ASCG 13 / 38
Location: 21079..22068

Top 3 Functional Annotations

Value Algorithm Source
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; TaxID=1203549 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. oral taxon 186 str. F0373.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 99.7
  • Coverage: 329.0
  • Bit_score: 632
  • Evalue 1.80e-178
DNA-directed RNA polymerase subunit alpha n=2 Tax=Microbacterium RepID=H8E4Z7_9MICO similarity UNIREF
DB: UNIREF100
  • Identity: 99.7
  • Coverage: 329.0
  • Bit_score: 632
  • Evalue 1.30e-178
rpoA; DNA-directed RNA polymerase, alpha subunit/40 kD subunit similarity KEGG
DB: KEGG
  • Identity: 95.1
  • Coverage: 329.0
  • Bit_score: 610
  • Evalue 1.90e-172

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Taxonomy

Microbacterium sp. oral taxon 186 → Microbacterium → Micrococcales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 990
GTGCTCATTGCACAGCGTCCCACTCTGACCGAGGAGAAGATCGGCGAGTTCCGCAGCCGCTTCGTCATCGAGCCGCTGGAGCCCGGCTTCGGCTACACGATCGGCAACGCGCTGCGCCGCAGCCTGCTGTCCTCGATCCCCGGTGCGGCTGTCACCAGCATCCGCATCGACGGCGTGCTGCACGAGTTCAGCACCATCCCGGGTGTGAAGGAGGATGTCACCGAGATCATCCTCAACATCAAGCAGCTCGTCGTCTCGTCCGAGCGCGACGAGCCGATCACGGCGTACCTGCGCAAGACCGGCGCCGGCGAGGTCACCGCCGCCGACATCTCCGCTCCGGCGGGTGTCGAGGTGCACAACCCCGAGCTGGTCATCGCGACGCTCAACGACTCGGCGAAGTTCGAGCTCGAGCTCACGATCGAGCGCGGCCGCGGCTACGTGTCGGCCACGCAGAACCGCAACGAGTACGCCGAGGCCGGTCAGATCCCGATCGACTCGATCTACTCGCCCGTGCTGAAGGTGTCGTACCGCGTCGACGCCACGCGTGCCGGTGAGCGCACCGACTTCGACAAGCTCGTCCTGGACGTCGAGGCCAAGCCGTCGATCTCGCCGCGCGACGCCGTCGCGTCGGCCGGTCGCACGCTCACCGAGCTGTTCGGTCTCGCCCGCGAGCTGAACGTCGAGGCCGAGGGCATCGAGATCGGCCCCGCGCCGGTCGCCGAGGTGCTCACCAACGAGCTGTCGATGCCGATCGAGGACCTCGATCTGACGGTGCGTTCGTACAACTGCCTCAAGCGCGAGGGCATCAACACGGTGTCCGAGCTGGTCGCCCTCTCCGAGACGCAGCTGATGAACATCCGCAACTTCGGTCAGAAGTCGGTCGACGAGGTGCGCGACAAGCTCGTCTCGCTCGGCCTGTCGCTGAAGGACTCGGTCCCCGGGTTCGACGGCGCGCACTTCTACGGCGGCTACGACGACGAGGCCCTCTGA
PROTEIN sequence
Length: 330
VLIAQRPTLTEEKIGEFRSRFVIEPLEPGFGYTIGNALRRSLLSSIPGAAVTSIRIDGVLHEFSTIPGVKEDVTEIILNIKQLVVSSERDEPITAYLRKTGAGEVTAADISAPAGVEVHNPELVIATLNDSAKFELELTIERGRGYVSATQNRNEYAEAGQIPIDSIYSPVLKVSYRVDATRAGERTDFDKLVLDVEAKPSISPRDAVASAGRTLTELFGLARELNVEAEGIEIGPAPVAEVLTNELSMPIEDLDLTVRSYNCLKREGINTVSELVALSETQLMNIRNFGQKSVDEVRDKLVSLGLSLKDSVPGFDGAHFYGGYDDEAL*