ggKbase home page

You do not have permission to do that.

Please email help@ggkbase.berkeley.edu for help.

berkeley_reactor_200306_planktonic_scaffold_340111_108

Organism: 2019_SCN_bioreactor_200211_planktonic_Micrococcales_71_20

near complete RP 51 / 55 MC: 1 BSCG 51 / 51 ASCG 13 / 38
Location: comp(108364..109389)

Top 3 Functional Annotations

Value Algorithm Source
ABC-type transporter, periplasmic subunit n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E2U5_9MICO similarity UNIREF
DB: UNIREF100
  • Identity: 82.7
  • Coverage: 341.0
  • Bit_score: 575
  • Evalue 1.90e-161
Iron ABC transporter substrate-binding protein {ECO:0000313|EMBL:KIC57445.1}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 83.6
  • Coverage: 341.0
  • Bit_score: 578
  • Evalue 4.10e-162
ABC transporter, periplasmic iron-siderophore binding protein precursor similarity KEGG
DB: KEGG
  • Identity: 54.7
  • Coverage: 329.0
  • Bit_score: 352
  • Evalue 7.40e-95

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Microbacterium hominis → Microbacterium → Micrococcales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 1026
ATGAGAAGACTGCGCACGGCCCTCGGCCTTGCCACGATCGTCACCGCGACAGCGCTCCTGCTGTCGGGCTGCGCCGCCGGAACGGCGAGCGCTCCGACAGACTCCGCCGCCGCGAGCGACGGATTCCCCGTCACCATCGACTCCGCGCTGGGATCCACGACGATCGAGAAGAAGCCGGAACGCATCGCGACGTGGGGATGGGGTGCCACCGACGCGGTGCTCGCCCTCGGCATCCAGCCGGTCGCGATCCCGGCGGACACCTACTCCGGCGGCGACGACAAGATGCCGCCGTGGATCGCCGAGGCCGTCGACAAGCTCGGCGGCACCAAGCCCGAGATCCTCGACGCGAGCGCGAACGAGATCCCGGTCGAGGCGCTCCTGAAGACGAACCCCGACGTCCTGCTCGCCCCGTACTCCGGGCTCACGCAGAAGGAGTACGACGCCGTGACGGCCGCCGGCATCCCCGTCGTCGCCTATCCGGACGCGCCGTGGACCACCCCCTGGCGCGATGTCGTCACGATCACGGGCAAGGCCCTCGGGATGAGCACCGAGGCGAGCGCGCTGCTGGCGAGCCTCGATGCACAGGTCGCGGATGCCGCGGCGGCCCACCCCGAGTTCGCGGGCACGACCATCGCCTACGTGGACGACGACGTCGACACGTTCTACCTCTATCTGCCCTCCGATCCGCGGGTGGAGATCCTCGAGGACCTGGGCTTCGTCTCGCCGCCCAGCGTGTCGGCTCTCGACACGGGCGAGGGCACGTTCTACACGACCGTGAGCCAGGAGAACCTCGACAAGATCGACTCCCAGGTGCTGTTCACCCAGGCCGAGGACCAGGCCACTCTCGACGAGTTCCTCGGCTCGTCGCGGGCGTCGCTCATTCCGGCGGTGCAGAAGGGCGCCGTCGCGGCGATGGTGGGCGCGGAGAACGTGGCGGCCGTGTCGCCGACCGCGCTGACCCTGCCCTGGGCGCTGCCGACGCTGACCGAGAAACTCGCCGCGGCCGTCGCCACGGCCAAGGGCTGA
PROTEIN sequence
Length: 342
MRRLRTALGLATIVTATALLLSGCAAGTASAPTDSAAASDGFPVTIDSALGSTTIEKKPERIATWGWGATDAVLALGIQPVAIPADTYSGGDDKMPPWIAEAVDKLGGTKPEILDASANEIPVEALLKTNPDVLLAPYSGLTQKEYDAVTAAGIPVVAYPDAPWTTPWRDVVTITGKALGMSTEASALLASLDAQVADAAAAHPEFAGTTIAYVDDDVDTFYLYLPSDPRVEILEDLGFVSPPSVSALDTGEGTFYTTVSQENLDKIDSQVLFTQAEDQATLDEFLGSSRASLIPAVQKGAVAAMVGAENVAAVSPTALTLPWALPTLTEKLAAAVATAKG*