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SCN_reactora_scaffold_154659

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Displaying items 1-30 of 93 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN_reactora_scaffold_154659_1
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3..347
DNA (345bp) protein (115aa)
Methyl-accepting chemotaxis protein n=1 Tax=Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) RepID=Q0K4P5_CUPNH
Methyl-accepting chemotaxis protein I (serine chemoreceptor protein)
Methyl-accepting chemotaxis protein I (Serine chemoreceptor protein) {ECO:0000313|EMBL:CDM25887.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
SCN_reactora_scaffold_154659_2
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(282..827)
DNA (546bp) protein (182aa)
Cytochrome B651 n=1 Tax=Alcanivorax pacificus W11-5 RepID=K2G086_9GAMM
Cytochrome B561
Cytochrome B561 {ECO:0000313|EMBL:CDM25203.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
SCN_reactora_scaffold_154659_3
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1132..1881
DNA (750bp) protein (250aa)
Triosephosphate isomerase (EC:5.3.1.1)
Triosephosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517}; Short=TIM {ECO:0000256|HAMAP-Rule:MF_00147};; EC=5.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517};; Triose-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
Triosephosphate isomerase n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9IGN0_BORPD
SCN_reactora_scaffold_154659_4
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1918..2391
DNA (474bp) protein (158aa)
Protein-export membrane protein n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GNA2_PUSST
Preprotein translocase subunit SecG
Preprotein translocase subunit SecG {ECO:0000313|EMBL:CDM25201.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
SCN_reactora_scaffold_154659_5
Laribacter hongkongensis, Laribacter, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2403..5288)
DNA (2886bp) protein (962aa)
Sensor protein n=1 Tax=Laribacter hongkongensis (strain HLHK9) RepID=C1D5Z2_LARHH
Sensor protein
Sensor protein {ECO:0000313|EMBL:ACO74023.1}; TaxID=557598 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Laribacter.;" source="Laribacter hongkongensis (strain HLHK9).;"
SCN_reactora_scaffold_154659_6
Laribacter hongkongensis, Laribacter, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5285..6286)
DNA (1002bp) protein (334aa)
RbsB protein n=1 Tax=Laribacter hongkongensis (strain HLHK9) RepID=C1D5Z3_LARHH
RbsB protein
RbsB protein {ECO:0000313|EMBL:ACO74024.1}; TaxID=557598 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Laribacter.;" source="Laribacter hongkongensis (strain HLHK9).;"
SCN_reactora_scaffold_154659_trna_1
unknown

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6602..6683
DNA (82bp)
transferRNA Leu
SCN_reactora_scaffold_154659_7
Marinomonas profundimaris, Marinomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6764..7807)
DNA (1044bp) protein (348aa)
UPI0003D5EBB0 related cluster n=1 Tax=unknown RepID=UPI0003D5EBB0
Chemotaxis protein {ECO:0000313|EMBL:ETI59328.1}; TaxID=1208321 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Marinomonas.;" source="Marinomonas profundimaris.;"
methyl-accepting chemotaxis sensory transducer
SCN_reactora_scaffold_154659_8
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8007..8978)
DNA (972bp) protein (324aa)
alcohol dehydrogenase n=1 Tax=Methylobacterium sp. WSM2598 RepID=UPI000362563B
alcohol dehydrogenase
Alcohol dehydrogenase zinc-binding domain protein {ECO:0000313|EMBL:ACA20462.1}; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
SCN_reactora_scaffold_154659_9
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9078..9926
DNA (849bp) protein (283aa)
LysR family transcriptional regulator n=1 Tax=Ochrobactrum anthropi RepID=UPI00028A14FB
LysR family transcriptional regulator {ECO:0000313|EMBL:EXL08486.1}; TaxID=529 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi.;"
bacterial regulatory helix-turn-helix , lysR family protein
SCN_reactora_scaffold_154659_10
Burkholderia sp. H160, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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9950..10516
DNA (567bp) protein (189aa)
Isochorismatase hydrolase n=1 Tax=Burkholderia sp. H160 RepID=B5WB01_9BURK
Isochorismatase hydrolase {ECO:0000313|EMBL:EEA04349.1}; TaxID=516466 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. H160.;"
isochorismatase hydrolase
SCN_reactora_scaffold_154659_11
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10530..10982)
DNA (453bp) protein (151aa)
Transcriptional regulator, MarR family n=1 Tax=Comamonas testosteroni (strain CNB-2) RepID=D0J897_COMT2
transcriptional regulator, MarR family
Transcriptional regulator, MarR family {ECO:0000313|EMBL:CDM25172.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
SCN_reactora_scaffold_154659_12
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11050..11838
DNA (789bp) protein (263aa)
Putative ABC transporter ATP-binding protein n=1 Tax=Comamonas testosteroni ATCC 11996 RepID=H1RKZ1_COMTE
iron-chelator utilization protein
Iron-chelator utilization protein {ECO:0000313|EMBL:CDM25171.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
SCN_reactora_scaffold_154659_13
R_Burkholderiales_64_960, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12006..14663
DNA (2658bp) protein (886aa)
histidine kinase n=1 Tax=Acidovorax radicis RepID=UPI0002377F72
sensory box protein
Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_64_960_curated
SCN_reactora_scaffold_154659_14
Idiomarina salinarum, Idiomarina, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14681..15247)
DNA (567bp) protein (189aa)
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI0002E84214
NADPH-dependent FMN reductase {ECO:0000313|EMBL:KFZ30915.1}; TaxID=435908 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Idiomarinaceae; Idiomarina.;" source="Idiomarina salinarum.;"
NADPH-dependent FMN reductase
SCN_reactora_scaffold_154659_15
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15320..16201)
DNA (882bp) protein (294aa)
Pirin family protein n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=Q0C3K0_HYPNA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDM25130.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
SCN_reactora_scaffold_154659_16
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16263..17558)
DNA (1296bp) protein (432aa)
C4-dicarboxylate ABC transporter permease n=1 Tax=Comamonas sp. B-9 RepID=UPI000395B36A
TRAP dicarboxylate transporter, DctM subunit
TRAP dicarboxylate transporter, DctM subunit {ECO:0000313|EMBL:CDM25129.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
SCN_reactora_scaffold_154659_17
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17551..18057)
DNA (507bp) protein (169aa)
C4-dicarboxylate ABC transporter substrate-binding protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI000375D1C8
TRAP dicarboxylate transporter, DctQ subunit
TRAP dicarboxylate transporter, DctQ subunit {ECO:0000313|EMBL:CDM25128.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
SCN_reactora_scaffold_154659_18
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18060..19040)
DNA (981bp) protein (327aa)
C4-dicarboxylate ABC transporter substrate-binding protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00037E84F1
TRAP transporter solute receptor
TRAP transporter solute receptor {ECO:0000313|EMBL:CDM25127.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
SCN_reactora_scaffold_154659_19
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19285..19956)
DNA (672bp) protein (224aa)
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI0003702B37
Transcriptional regulator, GntR family
Transcriptional regulator, GntR family {ECO:0000313|EMBL:CDM25126.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
SCN_reactora_scaffold_154659_20
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20035..20799
DNA (765bp) protein (255aa)
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI000377472E
Lactam utilization protein LamB
UPF0271 protein BN940_13381 {ECO:0000256|HAMAP-Rule:MF_00691}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
SCN_reactora_scaffold_154659_21
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20796..22598
DNA (1803bp) protein (601aa)
urea amidolyase-like protein (EC:6.3.4.6)
Urea amidolyase related protein {ECO:0000313|EMBL:ADX47302.1}; EC=6.3.4.6 {ECO:0000313|EMBL:ADX47302.1};; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB; 1011).;"
Urea amidolyase related protein n=1 Tax=Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011) RepID=F0QAR4_ACIAP
SCN_reactora_scaffold_154659_22
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22595..24367
DNA (1773bp) protein (591aa)
pyruvate carboxylase (EC:6.4.1.1)
UPI0003AA51D4 related cluster n=1 Tax=unknown RepID=UPI0003AA51D4
Acetyl/propionyl-CoA carboxylase, alpha subunit {ECO:0000313|EMBL:GAD23818.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
SCN_reactora_scaffold_154659_23
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24499..24975
DNA (477bp) protein (159aa)
Uncharacterized conserved protein n=1 Tax=Janthinobacterium sp. (strain Marseille) RepID=A6SZ41_JANMA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDM25113.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
SCN_reactora_scaffold_154659_24
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25027..26301)
DNA (1275bp) protein (425aa)
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC:2.6.1.62)
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase {ECO:0000313|EMBL:CDM25112.1}; EC=2.6.1.62 {ECO:0000313|EMBL:CDM25112.1};; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
Adenosylmethionine--8-amino-7-oxononanoate transaminase n=34 Tax=Bordetella RepID=F4LDW2_BORPC
SCN_reactora_scaffold_154659_25
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26501..27685
DNA (1185bp) protein (395aa)
8-amino-7-oxononanoate synthase (EC:2.3.1.47)
8-amino-7-oxononanoate synthase {ECO:0000313|EMBL:CDM25111.1}; EC=2.3.1.47 {ECO:0000313|EMBL:CDM25111.1};; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
Putative 8-amino-7-oxononanoate synthase/2-amino-3-ketobutyrate coenzyme A ligase n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AZR2_AZOBR
SCN_reactora_scaffold_154659_26
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27682..29220
DNA (1539bp) protein (513aa)
Biotin synthesis protein bioC / Dethiobiotin synthetase n=2 Tax=Alcaligenes xylosoxydans xylosoxydans RepID=R4Y098_ALCXX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDM25110.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
SCN_reactora_scaffold_154659_27
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29217..29912
DNA (696bp) protein (232aa)
Dethiobiotin synthetase (EC:6.3.3.3)
ATP-dependent dethiobiotin synthetase BioD {ECO:0000256|HAMAP-Rule:MF_00336}; EC=6.3.3.3 {ECO:0000256|HAMAP-Rule:MF_00336, ECO:0000313|EMBL:CDM25109.1};; DTB synthetase {ECO:0000256|HAMAP-Rule:MF_00336}; Dethiobiotin synthase {ECO:0000256|HAMAP-Rule:MF_00336}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
Dethiobiotin synthase n=1 Tax=Achromobacter arsenitoxydans SY8 RepID=H0FEU7_9BURK
SCN_reactora_scaffold_154659_28
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29943..30887)
DNA (945bp) protein (315aa)
Integral membrane protein n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GPS2_PUSST
integral membrane protein
Integral membrane protein {ECO:0000313|EMBL:CDM25108.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
SCN_reactora_scaffold_154659_trna_2
unknown

Not on your lists

comp(31056..31129)
DNA (74bp)
transferRNA Arg
Displaying items 1-30 of 93 in total

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