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scn_reactorb_scaffold_39976

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Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scn_reactorb_scaffold_39976_1
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(164..1633)
DNA (1470bp) protein (490aa)
Diguanylate cyclase n=1 Tax=Delftia acidovorans (strain DSM 14801 / SPH-1) RepID=A9BNR9_DELAS
diguanylate cyclase
Diguanylate cyclase {ECO:0000313|EMBL:ABX37964.1}; TaxID=398578 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans (strain DSM 14801 / SPH-1).;"
scn_reactorb_scaffold_39976_2
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1743..3119)
DNA (1377bp) protein (459aa)
DEAD/DEAH box helicase domain protein n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WB42_ACISJ
DEAD/DEAH box helicase domain-containing protein
DEAD/DEAH box helicase domain protein {ECO:0000313|EMBL:ABM43467.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
scn_reactorb_scaffold_39976_3
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3104..3349)
DNA (246bp) protein (82aa)
DEAD/DEAH box helicase domain protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GDG6_ALIDK
dead/deah box helicase domain-containing protein
DEAD/DEAH box helicase domain protein {ECO:0000313|EMBL:ADU98977.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
scn_reactorb_scaffold_39976_4
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3609..4742)
DNA (1134bp) protein (378aa)
Extracellular ligand-binding receptor n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TQ42_ALIDB
ABC transporter substrate-binding protein
Extracellular ligand-binding receptor {ECO:0000313|EMBL:ADU98976.1}; Flags: Precursor;; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
scn_reactorb_scaffold_39976_5
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4873..5457)
DNA (585bp) protein (195aa)
Oligoribonuclease {ECO:0000256|HAMAP-Rule:MF_00045}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00045};; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
oligoribonuclease (EC:3.1.-.-)
Oligoribonuclease n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T277_ACIDE
scn_reactorb_scaffold_39976_6
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5486..6784
DNA (1299bp) protein (433aa)
peptidase M48 n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00037F97D7
Zn-dependent protease with chaperone function {ECO:0000313|EMBL:GAD20630.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
Ste24 endopeptidase
scn_reactorb_scaffold_39976_7
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6781..7110
DNA (330bp) protein (110aa)
Putative pterin-4-alpha-carbinolamine dehydratase {ECO:0000256|HAMAP-Rule:MF_00434}; Short=PHS {ECO:0000256|HAMAP-Rule:MF_00434};; EC=4.2.1.96 {ECO:0000256|HAMAP-Rule:MF_00434};; 4-alpha-hydroxy-tetrahydropterin dehydratase {ECO:0000256|HAMAP-Rule:MF_00434}; Pterin carbinolamine dehydratase {ECO:0000256|HAMAP-Rule:MF_00434}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
Putative pterin-4-alpha-carbinolamine dehydratase n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9ME92_ACIET
transcriptional coactivator/pterin dehydratase
scn_reactorb_scaffold_39976_8
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7107..8057
DNA (951bp) protein (317aa)
Putative ribosome biogenesis GTPase RsgA {ECO:0000256|HAMAP-Rule:MF_01820}; EC=3.6.1.- {ECO:0000256|HAMAP-Rule:MF_01820};; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
ribosome biogenesis GTPase RsgA n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00037FDE4A
ribosome small subunit-dependent gtpase a
scn_reactorb_scaffold_39976_9
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8072..9730
DNA (1659bp) protein (553aa)
Sulphate transporter n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GDH2_ALIDK
sulfate transporter
Sulphate transporter {ECO:0000313|EMBL:AEB86001.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
scn_reactorb_scaffold_39976_10
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9789..10364)
DNA (576bp) protein (192aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1W949_ACISJ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABM42774.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
scn_reactorb_scaffold_39976_11
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10361..11461)
DNA (1101bp) protein (367aa)
histidinol-phosphate aminotransferase (EC:2.6.1.9)
Histidinol-phosphate aminotransferase {ECO:0000256|HAMAP-Rule:MF_01023}; EC=2.6.1.9 {ECO:0000256|HAMAP-Rule:MF_01023};; Imidazole acetol-phosphate transaminase {ECO:0000256|HAMAP-Rule:MF_01023}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
Histidinol-phosphate aminotransferase n=2 Tax=Alicycliphilus denitrificans RepID=E8TQ36_ALIDB
scn_reactorb_scaffold_39976_12
GWA2_Burkholderiales_64_37_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11543..12505)
DNA (963bp) protein (321aa)
Cobalamin biosynthesis protein CobD n=1 Tax=Acidovorax sp. KKS102 RepID=K0HPZ2_9BURK
cobalamin biosynthesis protein CbiB
Tax=GWA2_Burkholderiales_64_37_curated
scn_reactorb_scaffold_39976_13
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12554..13249)
DNA (696bp) protein (232aa)
NUDIX hydrolase n=1 Tax=Acidovorax sp. KKS102 RepID=K0HW43_9BURK
NUDIX hydrolase
NUDIX hydrolase {ECO:0000313|EMBL:AFU45067.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
scn_reactorb_scaffold_39976_14
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(13319..13702)
DNA (384bp) protein (128aa)
50S ribosomal protein L19 n=1 Tax=Comamonas sp. B-9 RepID=UPI000395B034
50S ribosomal protein L19
50S ribosomal protein L19 {ECO:0000256|HAMAP-Rule:MF_00402, ECO:0000256|RuleBase:RU000559}; TaxID=399795 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni KF-1.;"
scn_reactorb_scaffold_39976_15
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13826..14593)
DNA (768bp) protein (256aa)
trmD; tRNA (guanine-n(1)-)-methyltransferase (EC:2.1.1.31)
tRNA (guanine-N(1)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464}; EC=2.1.1.228 {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464};; M1G-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; tRNA [GM37] methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
tRNA (guanine-N(1)-)-methyltransferase n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9ME97_ACIET
scn_reactorb_scaffold_39976_16
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14608..15177)
DNA (570bp) protein (190aa)
16S rRNA-processing protein RimM n=1 Tax=Acidovorax radicis RepID=UPI0002375C18
rimM; 16S rRNA-processing protein RimM
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00006662}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
scn_reactorb_scaffold_39976_17
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(15256..15507)
DNA (252bp) protein (84aa)
30S ribosomal protein S16 n=1 Tax=Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011) RepID=F0Q948_ACIAP
30S ribosomal protein S16
30S ribosomal protein S16 {ECO:0000256|HAMAP-Rule:MF_00385}; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB; 1011).;"
scn_reactorb_scaffold_39976_18
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15641..16168
DNA (528bp) protein (176aa)
phosphinothricin acetyltransferase; K03823 phosphinothricin acetyltransferase [EC:2.3.1.183] id=12553167 bin=BDI species=Acidovorax avenae genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
phosphinothricin acetyltransferase
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scn_reactorb_scaffold_39976_19
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16165..16611
DNA (447bp) protein (149aa)
hypothetical protein id=12553166 bin=BDI species=Acidovorax sp. MR-S7 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scn_reactorb_scaffold_39976_20
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16667..17677)
DNA (1011bp) protein (337aa)
UPI0003A694B1 related cluster n=1 Tax=unknown RepID=UPI0003A694B1
Phosphate transporter {ECO:0000313|EMBL:GAD20618.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
phosphate transporter
scn_reactorb_scaffold_39976_21
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17706..18353)
DNA (648bp) protein (216aa)
Putative phosphate transport regulator n=2 Tax=Alicycliphilus denitrificans RepID=E8TQ26_ALIDB
phosphate transport regulator
Phosphate transport regulator {ECO:0000313|EMBL:GAO20428.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
scn_reactorb_scaffold_39976_22
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18481..18843)
DNA (363bp) protein (121aa)
hypothetical protein id=12553159 bin=BDI species=Acidovorax sp. KKS102 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scn_reactorb_scaffold_39976_23
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18927..19655)
DNA (729bp) protein (243aa)
UPI0003A8188F related cluster n=1 Tax=unknown RepID=UPI0003A8188F
ABC transporter-like protein {ECO:0000313|EMBL:GAD20614.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
ABC transporter-like protein
scn_reactorb_scaffold_39976_24
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19668..20450)
DNA (783bp) protein (261aa)
Amino acid/amide ABC transporter ATP-binding protein 1, HAAT family n=2 Tax=Acidovorax RepID=A1WB59_ACISJ
ABC transporter
ABC transporter related {ECO:0000313|EMBL:ACM34145.1}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
scn_reactorb_scaffold_39976_25
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20472..21548)
DNA (1077bp) protein (359aa)
Inner-membrane translocator n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MEA7_ACIET
inner-membrane translocator
Inner-membrane translocator {ECO:0000313|EMBL:ACM34146.1}; Flags: Precursor;; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
scn_reactorb_scaffold_39976_26
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21562..22491)
DNA (930bp) protein (310aa)
Amino acid/amide ABC transporter membrane protein 1, HAAT family n=2 Tax=Acidovorax RepID=A1WB61_ACISJ
inner-membrane translocator
Amino acid/amide ABC transporter membrane protein 1, HAAT family {ECO:0000313|EMBL:ABM43486.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
scn_reactorb_scaffold_39976_27
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22745..24052)
DNA (1308bp) protein (436aa)
ATPase AAA n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00035FEAC0
ATPase AAA {ECO:0000313|EMBL:GAD20610.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
AAA ATPase
scn_reactorb_scaffold_39976_28
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24134..24931)
DNA (798bp) protein (266aa)
Integron integrase n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GE58_ALIDK
integron integrase
Integron integrase {ECO:0000313|EMBL:AEB86020.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
scn_reactorb_scaffold_39976_29
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26178..26687)
DNA (510bp) protein (170aa)
transposase IS116/IS110/IS902 family protein id=5083457 bin=GWF1_Burkholderiales_GWF1_66_17 species=unknown genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
transposase IS116/IS110/IS902 family protein
Tax=GWE1_Burkholderiales_65_30_curated
Displaying 29 items

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